Literature DB >> 17674619

A field theoretical approach to medical natural language processing.

Ricky K Taira1, Vijayaraghavan Bashyam, Hooshang Kangarloo.   

Abstract

A parser for medical free text reports has been developed that is based on a chemistry/physics inspired "field theory" for word-word sentence-level dependencies. The transition from the linguistic world to the world of interacting particles with potential energies is guided by a psycholinguistics thought experiment related to the amount of "work" required to bring a reference word into an anchored configuration of words. Calibration experiments involving four and five grams were conducted. Data from these experiments were used as a knowledge source for estimating field conditions for words in sentences sampled from a corpus of medical reports. The result of the parser is a dependency tree that represents the global minimum energy state of the system of words for a given sentence. The system was trained and tested on a corpus of radiology reports. Preliminary performance, as quantified by link recall and precision statistics, is 84.9% and 89.9%, respectively.

Mesh:

Year:  2007        PMID: 17674619     DOI: 10.1109/titb.2006.884368

Source DB:  PubMed          Journal:  IEEE Trans Inf Technol Biomed        ISSN: 1089-7771


  8 in total

1.  Problem-centric organization and visualization of patient imaging and clinical data.

Authors:  Vijayaraghavan Bashyam; William Hsu; Emily Watt; Alex A T Bui; Hooshang Kangarloo; Ricky K Taira
Journal:  Radiographics       Date:  2009-01-23       Impact factor: 5.333

2.  Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences.

Authors:  Jung-wei Fan; Elly W Yang; Min Jiang; Rashmi Prasad; Richard M Loomis; Daniel S Zisook; Josh C Denny; Hua Xu; Yang Huang
Journal:  J Am Med Inform Assoc       Date:  2013-08-01       Impact factor: 4.497

3.  Deriving a probabilistic syntacto-semantic grammar for biomedicine based on domain-specific terminologies.

Authors:  Jung-Wei Fan; Carol Friedman
Journal:  J Biomed Inform       Date:  2011-04-28       Impact factor: 6.317

4.  A Neuro-Oncology Workstation for Structuring, Modeling, and Visualizing Patient Records.

Authors:  William Hsu; Corey W Arnold; Ricky K Taira
Journal:  IHI       Date:  2010-11

5.  Tools for improving the characterization and visualization of changes in neuro-oncology patients.

Authors:  William Hsu; Ricky K Taira
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

6.  Context-based electronic health record: toward patient specific healthcare.

Authors:  William Hsu; Ricky K Taira; Suzie El-Saden; Hooshang Kangarloo; Alex A T Bui
Journal:  IEEE Trans Inf Technol Biomed       Date:  2012-03

7.  A tool for improving the longitudinal imaging characterization for neuro-oncology cases.

Authors:  Ricky K Taira; Ricky Taira; Alex Bui; Alex At Bui; William Hsu; Vijayaraghavan Bashyam; Shishir Dube; Emily Watt; Lewellyn Andrada; Suzie El-Saden; Timothy Cloughesy; Hooshang Kangarloo
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

8.  Automated detection of radiology reports that document non-routine communication of critical or significant results.

Authors:  Paras Lakhani; Curtis P Langlotz
Journal:  J Digit Imaging       Date:  2010-12       Impact factor: 4.056

  8 in total

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