Literature DB >> 17663699

OneMap: software for genetic mapping in outcrossing species.

G R A Margarido1, A P Souza, A A F Garcia.   

Abstract

OneMap is an environment for constructing linkage maps of outcrossing plant species, using full-sib families derived from two outbred parents. The analyses are performed using a novel methodology based on the maximum likelihood approach for simultaneous estimation of linkage and linkage phases (Wu et al. 2002), which has been successfully applied to sugarcane (Garcia et al. 2006). It is implemented as a set of functions for the freely distributed software R, and handles pairwise marker analysis, marker ordering and map refinement. The software is freely available at http://www.ciagri.usp.br/ approximately aafgarci/OneMap/.

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Year:  2007        PMID: 17663699     DOI: 10.1111/j.2007.0018-0661.02000.x

Source DB:  PubMed          Journal:  Hereditas        ISSN: 0018-0661            Impact factor:   3.271


  115 in total

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Journal:  Theor Appl Genet       Date:  2012-05       Impact factor: 5.699

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Authors:  Gail M Timmerman-Vaughan; Leire Moya; Tonya J Frew; Sarah R Murray; Ross Crowhurst
Journal:  Theor Appl Genet       Date:  2016-01-22       Impact factor: 5.699

3.  Identification of single-nucleotide polymorphism markers associated with cortisol response to crowding in rainbow trout.

Authors:  Sixin Liu; Roger L Vallejo; Guangtu Gao; Yniv Palti; Gregory M Weber; Alvaro Hernandez; Caird E Rexroad
Journal:  Mar Biotechnol (NY)       Date:  2015-02-05       Impact factor: 3.619

4.  Construction of Genetic Linkage Maps in Multiparental Populations.

Authors:  Chaozhi Zheng; Martin P Boer; Fred A van Eeuwijk
Journal:  Genetics       Date:  2019-06-10       Impact factor: 4.562

5.  A frog with three sex chromosomes that co-mingle together in nature: Xenopus tropicalis has a degenerate W and a Y that evolved from a Z chromosome.

Authors:  Benjamin L S Furman; Caroline M S Cauret; Martin Knytl; Xue-Ying Song; Tharindu Premachandra; Caleb Ofori-Boateng; Danielle C Jordan; Marko E Horb; Ben J Evans
Journal:  PLoS Genet       Date:  2020-11-09       Impact factor: 5.917

6.  Mimicry diversification in Papilio dardanus via a genomic inversion in the regulatory region of engrailed-invected.

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Journal:  Proc Biol Sci       Date:  2020-04-29       Impact factor: 5.349

7.  A genetic linkage map for the salmon louse (Lepeophtheirus salmonis): evidence for high male:female and inter-familial recombination rate differences.

Authors:  Roy G Danzmann; Joseph D Norman; Eric B Rondeau; Amber M Messmer; Matthew P Kent; Sigbjørn Lien; Okechukwu Igboeli; Mark D Fast; Ben F Koop
Journal:  Mol Genet Genomics       Date:  2018-11-20       Impact factor: 3.291

8.  Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations.

Authors:  Chenxi Zhou; Bode Olukolu; Dorcus C Gemenet; Shan Wu; Wolfgang Gruneberg; Minh Duc Cao; Zhangjun Fei; Zhao-Bang Zeng; Andrew W George; Awais Khan; G Craig Yencho; Lachlan J M Coin
Journal:  Nat Genet       Date:  2020-10-30       Impact factor: 38.330

9.  Supergene evolution via stepwise duplications and neofunctionalization of a floral-organ identity gene.

Authors:  Cuong Nguyen Huu; Barbara Keller; Elena Conti; Christian Kappel; Michael Lenhard
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-31       Impact factor: 11.205

10.  Mapping of within-species segregation distortion in Drosophila persimilis and hybrid sterility between D. persimilis and D. pseudoobscura.

Authors:  S R Mcdermott; M A F Noor
Journal:  J Evol Biol       Date:  2012-08-01       Impact factor: 2.411

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