Literature DB >> 17662856

Transformation of the plastid genome to study RNA editing.

Kerry A Lutz1, Pal Maliga.   

Abstract

In this chapter we provide an overview of cytosine-to-uridine (C-to-U) RNA editing in the plastids of higher plants. Particular emphasis will be placed on the role plastid transformation played in understanding the editing process. We discuss how plastid transformation enabled identification of mRNA cis elements for editing and gave the first insight into the role of editing trans factors. The introduction will be followed by a protocol for plastid transformation, including vector design employed to identify editing cis elements. We also discuss how to test RNA editing in vivo by cDNA sequencing. At the end, we summarize the status of the field and outline future directions.

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Year:  2007        PMID: 17662856     DOI: 10.1016/S0076-6879(07)24023-6

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  10 in total

Review 1.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

2.  Transformation of the Plastid Genome in Tobacco: The Model System for Chloroplast Genome Engineering.

Authors:  Pal Maliga; Tarinee Tungsuchat-Huang; Kerry Ann Lutz
Journal:  Methods Mol Biol       Date:  2021

3.  Visual spectinomycin resistance (aadA(au)) gene for facile identification of transplastomic sectors in tobacco leaves.

Authors:  Tarinee Tungsuchat-Huang; Kristina Marie Slivinski; Sugey Ramona Sinagawa-Garcia; Pal Maliga
Journal:  Plant Mol Biol       Date:  2010-12-31       Impact factor: 4.076

4.  Study of plastid genome stability in tobacco reveals that the loss of marker genes is more likely by gene conversion than by recombination between 34-bp loxP repeats.

Authors:  Tarinee Tungsuchat-Huang; Sugey Ramona Sinagawa-García; Octavio Paredes-López; Pal Maliga
Journal:  Plant Physiol       Date:  2010-03-12       Impact factor: 8.340

5.  A guide to choosing vectors for transformation of the plastid genome of higher plants.

Authors:  Kerry Ann Lutz; Arun Kumar Azhagiri; Tarinee Tungsuchat-Huang; Pal Maliga
Journal:  Plant Physiol       Date:  2007-10-26       Impact factor: 8.340

6.  Genetic transformation of the sugar beet plastome.

Authors:  Francesca De Marchis; Yongxin Wang; Piergiorgio Stevanato; Sergio Arcioni; Michele Bellucci
Journal:  Transgenic Res       Date:  2008-06-13       Impact factor: 2.788

Review 7.  Advancing organelle genome transformation and editing for crop improvement.

Authors:  Shengchun Li; Ling Chang; Jiang Zhang
Journal:  Plant Commun       Date:  2021-01-04

8.  Optimization of transplastomic production of hemicellulases in tobacco: effects of expression cassette configuration and tobacco cultivar used as production platform on recombinant protein yields.

Authors:  Igor Kolotilin; Angelo Kaldis; Eridan Orlando Pereira; Serge Laberge; Rima Menassa
Journal:  Biotechnol Biofuels       Date:  2013-05-03       Impact factor: 6.040

9.  A comparative approach to elucidate chloroplast genome replication.

Authors:  Neeraja M Krishnan; Basuthkar J Rao
Journal:  BMC Genomics       Date:  2009-05-20       Impact factor: 3.969

10.  Comparative chloroplast genomes of photosynthetic orchids: insights into evolution of the Orchidaceae and development of molecular markers for phylogenetic applications.

Authors:  Jing Luo; Bei-Wei Hou; Zhi-Tao Niu; Wei Liu; Qing-Yun Xue; Xiao-Yu Ding
Journal:  PLoS One       Date:  2014-06-09       Impact factor: 3.240

  10 in total

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