Literature DB >> 17656587

Structure in an extreme environment: NMR at high salt.

Bulent Binbuga1, Arezue F B Boroujerdi, John K Young.   

Abstract

Proteins from halophiles have adapted to challenging environmental conditions and require salt for their structure and function. How halophilic proteins adapted to a hypersaline environment is still an intriguing question. It is important to mimic the physiological conditions of the archae extreme halophiles when characterizing their enzymes, including structural characterization. The NMR derived structure of Haloferax volcanii dihydrofolate reductase in 3.5 M NaCl is presented, and represents the first high salt structure calculated using NMR data. Structure calculations show that this protein has a solution structure which is similar to the previously determined crystal structure with a difference at the N terminus of beta3 and the type of beta-turn connection beta7 and beta8.

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Year:  2007        PMID: 17656587      PMCID: PMC2203353          DOI: 10.1110/ps.072950407

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  24 in total

1.  Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis.

Authors:  Dan McElheny; Jason R Schnell; Jonathan C Lansing; H Jane Dyson; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-28       Impact factor: 11.205

2.  The dynamic energy landscape of dihydrofolate reductase catalysis.

Authors:  David D Boehr; Dan McElheny; H Jane Dyson; Peter E Wright
Journal:  Science       Date:  2006-09-15       Impact factor: 47.728

3.  1H, 13C and 15N backbone and side chain resonance assignments of Haloferax volcanii DHFR1.

Authors:  Bulent Binbuga; John K Young
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii.

Authors:  U Pieper; G Kapadia; M Mevarech; O Herzberg
Journal:  Structure       Date:  1998-01-15       Impact factor: 5.006

6.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

7.  Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence.

Authors:  M R Sawaya; J Kraut
Journal:  Biochemistry       Date:  1997-01-21       Impact factor: 3.162

8.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

9.  Crystal structures of Escherichia coli dihydrofolate reductase complexed with 5-formyltetrahydrofolate (folinic acid) in two space groups: evidence for enolization of pteridine O4.

Authors:  H Lee; V M Reyes; J Kraut
Journal:  Biochemistry       Date:  1996-06-04       Impact factor: 3.162

10.  A two-alpha-helix extra domain mediates the halophilic character of a plant-type ferredoxin from halophilic archaea.

Authors:  Bianca-Lucia Marg; Kristian Schweimer; Heinrich Sticht; Dieter Oesterhelt
Journal:  Biochemistry       Date:  2005-01-11       Impact factor: 3.162

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  3 in total

1.  Effects of salt on the structure, stability, and function of a halophilic dihydrofolate reductase from a hyperhalophilic archaeon, Haloarcula japonica strain TR-1.

Authors:  Yurina Miyashita; Eiji Ohmae; Kaoru Nakasone; Katsuo Katayanagi
Journal:  Extremophiles       Date:  2015-01-24       Impact factor: 2.395

2.  Halophilic mechanism of the enzymatic function of a moderately halophilic dihydrofolate reductase from Haloarcula japonica strain TR-1.

Authors:  Yurina Miyashita; Eiji Ohmae; Teikichi Ikura; Kaoru Nakasone; Katsuo Katayanagi
Journal:  Extremophiles       Date:  2017-03-27       Impact factor: 2.395

3.  Protein attributes contribute to halo-stability, bioinformatics approach.

Authors:  Esmaeil Ebrahimie; Mansour Ebrahimi; Narjes Rahpayma Sarvestani; Mahdi Ebrahimi
Journal:  Saline Systems       Date:  2011-05-18
  3 in total

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