Literature DB >> 17643433

Schistosoma mansoni genome: closing in on a final gene set.

Brian J Haas1, Matthew Berriman, Hirohisa Hirai, Gustavo G Cerqueira, Philip T Loverde, Najib M El-Sayed.   

Abstract

The Schistosoma mansoni genome sequencing consortium has recently released the latest versions of the genome assembly as well as an automated preliminary gene structure annotation. The combined datasets constitute a vast resource for researchers to exploit in a variety of post-genomic studies with an emphasis of transcriptomic and proteomic tools. Here we present an innovative method used for combining diverse sources of evidence including ab initio gene predictions, protein and transcript sequence homologies, and cross-genome sequence homologies between S. mansoni and Schistosoma japonicum to define a comprehensive list of protein-coding genes.

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Year:  2007        PMID: 17643433     DOI: 10.1016/j.exppara.2007.06.005

Source DB:  PubMed          Journal:  Exp Parasitol        ISSN: 0014-4894            Impact factor:   2.011


  27 in total

1.  Frontiers in parasite neurobiology: parasite genomics, neural signalling and new targets for control.

Authors:  Adrian J Wolstenholme; Alan S Bowman; David B Sattelle
Journal:  Invert Neurosci       Date:  2007-12

2.  Integration of reporter transgenes into Schistosoma mansoni chromosomes mediated by pseudotyped murine leukemia virus.

Authors:  Kristine J Kines; Maria E Morales; Victoria H Mann; Geoffrey N Gobert; Paul J Brindley
Journal:  FASEB J       Date:  2008-04-10       Impact factor: 5.191

Review 3.  Helminth infections: the great neglected tropical diseases.

Authors:  Peter J Hotez; Paul J Brindley; Jeffrey M Bethony; Charles H King; Edward J Pearce; Julie Jacobson
Journal:  J Clin Invest       Date:  2008-04       Impact factor: 14.808

Review 4.  In vitro manipulation of gene expression in larval Schistosoma: a model for postgenomic approaches in Trematoda.

Authors:  Timothy P Yoshino; Nathalie Dinguirard; Marina de Moraes Mourão
Journal:  Parasitology       Date:  2009-12-07       Impact factor: 3.234

5.  Genomic linkage map of the human blood fluke Schistosoma mansoni.

Authors:  Charles D Criscione; Claudia L L Valentim; Hirohisa Hirai; Philip T LoVerde; Timothy J C Anderson
Journal:  Genome Biol       Date:  2009-06-30       Impact factor: 13.583

6.  Interference with hemozoin formation represents an important mechanism of schistosomicidal action of antimalarial quinoline methanols.

Authors:  Juliana B R Corrêa Soares; Diego Menezes; Marcos A Vannier-Santos; Antonio Ferreira-Pereira; Giulliana T Almeida; Thiago M Venancio; Sergio Verjovski-Almeida; Vincent K Zishiri; David Kuter; Roger Hunter; Timothy J Egan; Marcus F Oliveira
Journal:  PLoS Negl Trop Dis       Date:  2009-07-14

7.  Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum.

Authors:  Claudia S Copeland; Manja Marz; Dominic Rose; Jana Hertel; Paul J Brindley; Clara Bermudez Santana; Stephanie Kehr; Camille Stephan-Otto Attolini; Peter F Stadler
Journal:  BMC Genomics       Date:  2009-10-08       Impact factor: 3.969

8.  Identification of the Schistosoma mansoni TNF-alpha receptor gene and the effect of human TNF-alpha on the parasite gene expression profile.

Authors:  Katia C Oliveira; Mariana L P Carvalho; Thiago M Venancio; Patricia A Miyasato; Toshie Kawano; Ricardo DeMarco; Sergio Verjovski-Almeida
Journal:  PLoS Negl Trop Dis       Date:  2009-12-01

9.  Expression, immunolocalization and serodiagnostic value of a myophilin-like protein from Schistosoma japonicum.

Authors:  Hailin Peng; Kai Song; Chengyu Huang; Sai Ye; Huaiguang Song; Wei Hu; Zeguang Han; Donald P McManus; Guoping Zhao; Qinghua Zhang
Journal:  Exp Parasitol       Date:  2008-02-08       Impact factor: 2.011

10.  Advancing drug innovation for neglected diseases-criteria for lead progression.

Authors:  Solomon Nwaka; Bernadette Ramirez; Reto Brun; Louis Maes; Frank Douglas; Robert Ridley
Journal:  PLoS Negl Trop Dis       Date:  2009-08-25
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