Literature DB >> 17634746

Question 7: optimized energy consumption for protein synthesis.

Witold Szaflarski1, Knud H Nierhaus.   

Abstract

In our previous contribution (Nierhaus, Orig Life Evol Biosph, this volume, 2007) we mentioned that life had solved the problem of energy supply in three major steps, and that these steps also mark major stages during the development of life. We further outlined a possible scenario concerning a minimal translational apparatus focusing on the essential components necessary for protein synthesis. Here we continue that consideration by addressing on one of the main problems of early life, namely avoiding wasteful energy loss. With regard to the limiting energy supply of early living systems, i.e. those of say more than 3,000 Ma, a carefully controlled and product oriented energy consumption was in demand. In recent years we learned how a bacterial cell avoids energy drain, thus being able to pump most of the energy into protein synthesis. These lessons must be followed by the design of a minimal living system, which is surveyed in this short article.

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Year:  2007        PMID: 17634746     DOI: 10.1007/s11084-007-9091-4

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  11 in total

1.  Prolonging cell-free protein synthesis by selective reagent additions.

Authors:  D M Kim; J R Swartz
Journal:  Biotechnol Prog       Date:  2000 May-Jun

Review 2.  The ribosome through the looking glass.

Authors:  Daniel N Wilson; Knud H Nierhaus
Journal:  Angew Chem Int Ed Engl       Date:  2003-08-04       Impact factor: 15.336

3.  A production of amino acids under possible primitive earth conditions.

Authors:  S L MILLER
Journal:  Science       Date:  1953-05-15       Impact factor: 47.728

Review 4.  Developing cell-free biology for industrial applications.

Authors:  Jim Swartz
Journal:  J Ind Microbiol Biotechnol       Date:  2006-05-09       Impact factor: 3.346

5.  Question 6: early steps of evolution and some ideas about a simplified translational machinery.

Authors:  Knud H Nierhaus
Journal:  Orig Life Evol Biosph       Date:  2007-08-01       Impact factor: 1.950

6.  Synergism between the GTPase activities of EF-Tu.GTP and EF-G.GTP on empty ribosomes. Elongation factors as stimulators of the ribosomal oscillation between two conformations.

Authors:  J R Mesters; A P Potapov; J M de Graaf; B Kraal
Journal:  J Mol Biol       Date:  1994-10-07       Impact factor: 5.469

7.  The 160-kilobase genome of the bacterial endosymbiont Carsonella.

Authors:  Atsushi Nakabachi; Atsushi Yamashita; Hidehiro Toh; Hajime Ishikawa; Helen E Dunbar; Nancy A Moran; Masahira Hattori
Journal:  Science       Date:  2006-10-13       Impact factor: 47.728

8.  Amino acid stabilization for cell-free protein synthesis by modification of the Escherichia coli genome.

Authors:  Nathalie Michel-Reydellet; Kara Calhoun; James Swartz
Journal:  Metab Eng       Date:  2004-07       Impact factor: 9.783

9.  Mimicking the Escherichia coli cytoplasmic environment activates long-lived and efficient cell-free protein synthesis.

Authors:  Michael C Jewett; James R Swartz
Journal:  Biotechnol Bioeng       Date:  2004-04-05       Impact factor: 4.530

10.  Troubleshooting coupled in vitro transcription-translation system derived from Escherichia coli cells: synthesis of high-yield fully active proteins.

Authors:  Madina B Iskakova; Witold Szaflarski; Marc Dreyfus; Jaanus Remme; Knud H Nierhaus
Journal:  Nucleic Acids Res       Date:  2006-10-11       Impact factor: 16.971

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  13 in total

1.  Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis.

Authors:  Chunlai Chen; Benjamin Stevens; Jaskiran Kaur; Zeev Smilansky; Barry S Cooperman; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

2.  The alarmones (p)ppGpp directly regulate translation initiation during entry into quiescence.

Authors:  Simon Diez; Jaewook Ryu; Kelvin Caban; Ruben L Gonzalez; Jonathan Dworkin
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-23       Impact factor: 11.205

3.  The metabolic activity of Mycobacterium tuberculosis, assessed by use of a novel inducible GFP expression system, correlates with its capacity to inhibit phagosomal maturation and acidification in human macrophages.

Authors:  Bai-Yu Lee; Daniel L Clemens; Marcus A Horwitz
Journal:  Mol Microbiol       Date:  2008-03-19       Impact factor: 3.501

4.  Ribosome hibernation factor promotes Staphylococcal survival and differentially represses translation.

Authors:  Arnab Basu; Mee-Ngan F Yap
Journal:  Nucleic Acids Res       Date:  2016-03-21       Impact factor: 16.971

5.  Silencing of elongation factor-2 kinase potentiates the effect of 2-deoxy-D-glucose against human glioma cells through blunting of autophagy.

Authors:  Hao Wu; Hua Zhu; David X Liu; Ting-Kuang Niu; Xingcong Ren; Rajesh Patel; William N Hait; Jin-Ming Yang
Journal:  Cancer Res       Date:  2009-02-24       Impact factor: 12.701

6.  Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.

Authors:  Iskander Khusainov; Quentin Vicens; Rustam Ayupov; Konstantin Usachev; Alexander Myasnikov; Angelita Simonetti; Shamil Validov; Bruno Kieffer; Gulnara Yusupova; Marat Yusupov; Yaser Hashem
Journal:  EMBO J       Date:  2017-06-23       Impact factor: 11.598

7.  Elevated Expression of Toxin TisB Protects Persister Cells against Ciprofloxacin but Enhances Susceptibility to Mitomycin C.

Authors:  Daniel Edelmann; Florian H Leinberger; Nicole E Schmid; Markus Oberpaul; Till F Schäberle; Bork A Berghoff
Journal:  Microorganisms       Date:  2021-04-27

8.  Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis.

Authors:  Paul J S Skipp; Chris Hughes; Thérèse McKenna; Richard Edwards; James Langridge; Nicholas R Thomson; Ian N Clarke
Journal:  PLoS One       Date:  2016-02-12       Impact factor: 3.240

9.  The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus.

Authors:  Donna Matzov; Shintaro Aibara; Arnab Basu; Ella Zimmerman; Anat Bashan; Mee-Ngan F Yap; Alexey Amunts; Ada E Yonath
Journal:  Nat Commun       Date:  2017-09-28       Impact factor: 14.919

10.  Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism.

Authors:  Rasmus Kock Flygaard; Niels Boegholm; Marat Yusupov; Lasse B Jenner
Journal:  Nat Commun       Date:  2018-10-09       Impact factor: 14.919

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