| Literature DB >> 17629938 |
Afshin Abdirad1, Siavash Ghaderi-Sohi, Karem Shuyama, Chihaya Koriyama, Hosain Nadimi-Barforoosh, Sara Emami, Alireza Mosavi-Jarrahi, Azin Nahvijou, Suminori Akiba.
Abstract
BACKGROUND: Epstein-Barr virus has been proved to be associated with many of the human malignancy including gastric carcinoma, one of the most important human malignancies in the world. There has been no study about the presence of EBV in gastric adenocarcinoma in Iran.Entities:
Year: 2007 PMID: 17629938 PMCID: PMC1949397 DOI: 10.1186/1746-1596-2-25
Source DB: PubMed Journal: Diagn Pathol ISSN: 1746-1596 Impact factor: 2.644
List of primers and probes used in this study
| Genotype | Sequence | Type by probe or size after RE1 digestion | Reference |
| EBNA-3C | |||
| Primers | |||
| Sense | 5'-AGAAGGGGAGCGTGTGTTGT-3' | ||
| Antisense | 5'-GGCTCGTTTTTGACGTCGGC-3 | Sample et al. (53) | |
| Probes | |||
| Type 1 | 5'-GAAGATTCATCGTCAGTGTC-3' | 153 bp2 | |
| Type 2 | 5'-CCGTGATTTCTACCGGGAGT-3' | 246 bp | |
| BamHI-F | |||
| Primers | |||
| Sense | 5'-TCCCACCTGTTACCACATTC-3' | Prototype F: 198 bp | Lung et al. (54) |
| Antisense | 5'-GGCAATGGGACGTCTTGTAA-3' | Variant "f": 127 + 71 bp | |
| Probe | 5'-AAGGCTACCGTGCTAATTACCTCC-3' | Hudson et al. (55) | |
| BamHI-W1/I1 | |||
| Primers | |||
| Sense | 5'-ACCTGCTACTCTTCGGAAAC-3' | Type I: 205 bp | Lung et al. (54) |
| Antisense | 5'-TCTGTCACAACCTCACTGTC-3' | Type "i": 130+75 bp | |
| XhoI site in LMP1 | |||
| Primers | |||
| Sense | 5'-AACAGTAGCGCCAAGAGGAG-3' | XhoI+:113 bp | Sandvej et al. (56) |
| Antisense | 5'-ATGGAACACGACCTTGAGAGG-3' | XhoI-: 67+46 bp |
1Restriction enzyme; 2Base pairs
Distribution of EBER-1 positive gastric carcinomas by histological type and gender
| Histology1 | Male | Female | Total |
| EBER+/N2 (%) | EBER+/N (%) | EBER+/N (%) | |
| pap | 0/11 (0) | 0/3 (0) | 0/14 (0) |
| tub1 | 0/36 (0) | 0/11 (0) | 0/47 (0) |
| tub2 | 1/50 (2) | 0/16 (0) | 1/66 (1) |
| muc | 0/16 (0) | 0/9 (0) | 0/25 (0) |
| por1 | 3/34 (8) | 1/16 (6) | 4/50 (8) |
| por2 | 4/40 (10) | 0/18 (0) | 4/58 (8) |
| sig | 0/9 (0) | 0/4 (0) | 0/13 (0) |
1 pap:papillary adenocarcinoma; tub1:well differentiated tubular adenocarcinoma; tub2:moderately differentiated adenocarcinoma; por1:solid poorly differentiated adenocarcinoma; por2:non-solid poorly differentiated adenocarcinoma; sig: signet ring cell carcinoma; muc:mucinous carcinoma; 2 total number of cases in each group (Based on Japanese research society for gastric cancer)
Figure 1A case of EBV positive gasrtric carcinoma. Moderately differentiated tubular adenocarcinoma with occasional tubul formation (A); nuclear EBER positive signal in all tumoral cells detected with in situ hybridization (B).
Result of logistic analysis
| Variables | EBER+/N1 | (%) | OR2 | 95% CI2 |
| Gender | ||||
| Female | 1/76 | (1) | 1 | reference |
| Male | 8/188 | (4) | 0.3 | 0.01–2.96 |
| Age | ||||
| ≥ 70 | 1/36 | (3) | 1 | reference |
| 50–69 | 5/180 | (3) | 0.8 | 0.08–44.62 |
| <50 | 3/54 | (6) | 1.3 | 0.08–81.25 |
| Location | ||||
| Upper | 1/71 | (1) | 1 | reference |
| Middle | 5/64 | (8) | 6.0 | 0.1–77.86 |
| Lower | 3/130 | (2) | 1.4 | 0.63–296.7 |
| Histology | ||||
| Diffuse | 8/121 | (7) | 1 | reference |
| Intestinal | 1/152 | (1) | 0.08 | 0.002–0.64 |
| Invasion | ||||
| Muscle | 3/33 | (9) | 1 | reference |
| serose | 6/222 | (3) | 3.6 | 0.47–24.03 |
1Total number in each group; 2OR and 95% confidence interval were obtained from exact test of binary logistic analysis.
Figure 2Result of southern blot hybridization for BamHI-F region. Four specimens are seen in this figure, each sample was loaded in 2 lanes with and without enzyme, respectively from left. The first specimen was not amplified in this experiment. The other three specimens were not cleaved by Bam-HI enzyme which means they are wild-type F. (+: positive control; +/enz: positive control with enzyme; -: negative control).
Figure 3Result of southern blot hybridization for BamHI-W1/I1 region. Each sample was loaded in 2 lanes with and without enzyme, respectively from left. In sample one there is no band in the second lane which suggests that the PCR product was digested but we could not detect the fragmented bands since the original band contained small number of DNA copies, so we regarded it as type "i". Samples 2, 5, and 6 are cleaved which means they are type "i". Polymorphism of samples 3 and 4 were not determined in this experiment. (+: positive control; +/enz: positive control with enzyme; -: negative control).
Figure 4Result of XhoI polymorphism in southern blot hybridization. Each sample was loaded in 2 lanes with and without enzyme respectively from left. The first and the second specimens are cleaved with enzyme which means they are XhoI+. The third one is XhoI-. (+: positive control; +/enz: positive control with enzyme; -: negative control).
Clinico-pathologic and genetic characteristics of EBV-GC
| Birth year | Diagnostic year | Age | Gender | Lacation | Invasion | Histology Lauren/WHO | EBNA-3 type A/B | BamHI-F type F/"f" | BamHI-I type I/"i" | XhoI +/- | |
| 1 | 1949 | 1981 | 32 | Male | Lower | Muscle | Diffuse/por1 | A | F | "i" | + |
| 2 | 1929 | 1982 | 53 | Male | Middle | Muscle | Diffuse/por1 | A | F | "i" | - |
| 3 | 1928 | 1983 | 55 | Male | Middle | Serosa | Intestinal/tub2 | A | F | "i" | + |
| 4 | 1928 | 1983 | 55 | Male | Middle | Serosa | Diffuse/por2 | A | F | I | + |
| 5 | 1940 | 1983 | 43 | Female | Lower | Muscle | Diffuse/por1 | A | F | "i" | - |
| 6 | 1930 | 1986 | 56 | Male | Middle | Serosa | Diffuse/por2 | A | ND1 | "i" | + |
| 7 | 1928 | 1988 | 60 | Male | Upper | Serosa | Diffuse/por1 | A | F | "i" | + |
| 8 | 1928 | 2001 | 73 | Male | Middle | Serosa | Difuse/por2 | A | "f' | "i" | - |
| 9 | 1953 | 2002 | 49 | Male | Lower | Seroasa | Diffuse/por2 | A | "f" | "i" | + |
1Not determined; tub2: moderately differentiated adenocarcinoma por1: solid poorly differentiated adenocarcinoma; por2: non-solid poorly differentiated adenocarcinoma