Literature DB >> 17626843

Evidence for the importance of electrostatics in the function of two distinct families of ribosome inactivating toxins.

Alexei V Korennykh, Carl C Correll, Joseph A Piccirilli.   

Abstract

Alpha-sarcin and ricin represent two structurally and mechanistically distinct families of site-specific enzymes that block translation by irreversibly modifying the sarcin/ricin loop (SRL) of 23S-28S rRNA. alpha-Sarcin family enzymes are designated as ribotoxins and act as endonucleases. Ricin family enzymes are designated as ribosome inactivating proteins (RIP) and act as N-glycosidases. Recently, we demonstrated that basic surface residues of the ribotoxin restrictocin promote rapid and specific ribosome targeting by this endonuclease. Here, we report that three RIP: ricin A, saporin, and gypsophilin depurinate the ribosome with strong salt sensitivity and achieve unusually fast kcat/Km approximately 10(9)-10(10) M(-1) s(-1), implying that RIP share with ribotoxins a common mechanism of electrostatically facilitated ribosome targeting. Bioinformatics analysis of RIP revealed that surface charge properties correlate with the presence of the transport chain in the RIP molecule, suggesting a second role for the surface charge in RIP transport. These findings put forward surface electrostatics as an important determinant of RIP activity.

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Year:  2007        PMID: 17626843      PMCID: PMC1950761          DOI: 10.1261/rna.619707

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  26 in total

1.  Predicting the rate enhancement of protein complex formation from the electrostatic energy of interaction.

Authors:  T Selzer; G Schreiber
Journal:  J Mol Biol       Date:  1999-03-26       Impact factor: 5.469

2.  Rational design of faster associating and tighter binding protein complexes.

Authors:  T Selzer; S Albeck; G Schreiber
Journal:  Nat Struct Biol       Date:  2000-07

3.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

Review 4.  TAT peptide internalization: seeking the mechanism of entry.

Authors:  E Vivès; J-P Richard; C Rispal; B Lebleu
Journal:  Curr Protein Pept Sci       Date:  2003-04       Impact factor: 3.272

5.  Free energy landscapes of encounter complexes in protein-protein association.

Authors:  C J Camacho; Z Weng; S Vajda; C DeLisi
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

Review 6.  Delivery into cells: lessons learned from plant and bacterial toxins.

Authors:  K Sandvig; B van Deurs
Journal:  Gene Ther       Date:  2005-06       Impact factor: 5.250

7.  The electrostatic character of the ribosomal surface enables extraordinarily rapid target location by ribotoxins.

Authors:  Alexei V Korennykh; Joseph A Piccirilli; Carl C Correll
Journal:  Nat Struct Mol Biol       Date:  2006-04-09       Impact factor: 15.369

8.  Saporin and ricin A chain follow different intracellular routes to enter the cytosol of intoxicated cells.

Authors:  Riccardo Vago; Catherine J Marsden; J Michael Lord; Rodolfo Ippoliti; David J Flavell; Sopsamorn-U Flavell; Aldo Ceriotti; M Serena Fabbrini
Journal:  FEBS J       Date:  2005-10       Impact factor: 5.542

9.  Comparative studies on kinetics of inhibition of protein synthesis in intact cells by ricin and a conjugate of ricin B-chain with momordin.

Authors:  S Sharma; S K Podder; A A Karande
Journal:  Mol Cell Biochem       Date:  1999-10       Impact factor: 3.396

Review 10.  Retrograde transport pathways utilised by viruses and protein toxins.

Authors:  Robert A Spooner; Daniel C Smith; Andrew J Easton; Lynne M Roberts; J Michael Lord
Journal:  Virol J       Date:  2006-04-07       Impact factor: 4.099

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  16 in total

1.  Pentameric organization of the ribosomal stalk accelerates recruitment of ricin a chain to the ribosome for depurination.

Authors:  Xiao-Ping Li; Przemyslaw Grela; Dawid Krokowski; Marek Tchórzewski; Nilgun E Tumer
Journal:  J Biol Chem       Date:  2010-10-25       Impact factor: 5.157

2.  Identification of amino acids critical for the cytotoxicity of Shiga toxin 1 and 2 in Saccharomyces cerevisiae.

Authors:  Rong Di; Eric Kyu; Varsha Shete; Hemalatha Saidasan; Peter C Kahn; Nilgun E Tumer
Journal:  Toxicon       Date:  2010-12-22       Impact factor: 3.033

3.  Dissection of the high rate constant for the binding of a ribotoxin to the ribosome.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-03       Impact factor: 11.205

Review 4.  Interaction of ricin and Shiga toxins with ribosomes.

Authors:  Nilgun E Tumer; Xiao-Ping Li
Journal:  Curr Top Microbiol Immunol       Date:  2012       Impact factor: 4.291

5.  Arginine residues on the opposite side of the active site stimulate the catalysis of ribosome depurination by ricin A chain by interacting with the P-protein stalk.

Authors:  Xiao-Ping Li; Peter C Kahn; Jennifer Nielsen Kahn; Przemyslaw Grela; Nilgun E Tumer
Journal:  J Biol Chem       Date:  2013-09-03       Impact factor: 5.157

Review 6.  Rate theories for biologists.

Authors:  Huan-Xiang Zhou
Journal:  Q Rev Biophys       Date:  2010-08-09       Impact factor: 5.318

7.  A two-step binding model proposed for the electrostatic interactions of ricin a chain with ribosomes.

Authors:  Xiao-Ping Li; Jia-Chi Chiou; Miguel Remacha; Juan P G Ballesta; Nilgun E Tumer
Journal:  Biochemistry       Date:  2009-05-12       Impact factor: 3.162

8.  Characterization of abasic endonuclease activity of human Ape1 on alternative substrates, as well as effects of ATP and sequence context on AP site incision.

Authors:  Brian R Berquist; Daniel R McNeill; David M Wilson
Journal:  J Mol Biol       Date:  2008-04-03       Impact factor: 5.469

9.  The ribotoxin restrictocin recognizes its RNA substrate by selective engagement of active site residues.

Authors:  Matthew J Plantinga; Alexei V Korennykh; Joseph A Piccirilli; Carl C Correll
Journal:  Biochemistry       Date:  2011-03-18       Impact factor: 3.162

10.  The C-terminal fragment of the ribosomal P protein complexed to trichosanthin reveals the interaction between the ribosome-inactivating protein and the ribosome.

Authors:  Priscilla Hiu-Mei Too; Meiji Kit-Wan Ma; Amanda Nga-Sze Mak; Yuen-Ting Wong; Christine Kit-Ching Tung; Guang Zhu; Shannon Wing-Ngor Au; Kam-Bo Wong; Pang-Chui Shaw
Journal:  Nucleic Acids Res       Date:  2008-12-10       Impact factor: 16.971

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