Literature DB >> 17625855

Modulation of heme redox potential in the cytochrome c6 family.

Jonathan A R Worrall1, Beatrix G Schlarb-Ridley, Torsten Reda, Maria J Marcaida, Robert J Moorlen, Juergen Wastl, Judy Hirst, Derek S Bendall, Ben F Luisi, Christopher J Howe.   

Abstract

Cytochrome c6A is a unique dithio-cytochrome of green algae and plants. It has a very similar core structure to that of bacterial and algal cytochromes c6 but is unable to fulfill the same function of transferring electrons from cytochrome f to photosystem I. A key feature is that its heme midpoint potential is more than 200 mV below that of cytochrome c6 despite having His and Met as axial heme-iron ligands. To identify the molecular origins of the difference in potential, the structure of cytochrome c6 from the cyanobacterium Phormidium laminosum has been determined by X-ray crystallography and compared with the known structure of cytochrome c6A. One salient difference of the heme pockets is that a highly conserved Gln (Q51) in cytochrome c6 is replaced by Val (V52) in c6A. Using protein film voltammetry, we found that swapping these residues raised the c6A potential by +109 mV and decreased that of c6 by almost the same extent, -100 mV. X-ray crystallography of the V52Q protein showed that the Gln residue adopts the same configuration relative to the heme as in cytochrome c6 and we propose that this stereochemistry destabilizes the oxidized form of the heme. Consequently, replacement of Gln by Val was probably a key step in the evolution of cytochrome c6A from cytochrome c6, inhibiting reduction by the cytochrome b6f complex and facilitating establishment of a new function.

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Year:  2007        PMID: 17625855      PMCID: PMC7610927          DOI: 10.1021/ja072346g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  43 in total

1.  Increasing the redox potential of isoform 1 of yeast cytochrome c through the modification of select haem interactions.

Authors:  C Marc Lett; J Guy Guillemette
Journal:  Biochem J       Date:  2002-03-01       Impact factor: 3.857

2.  wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models.

Authors:  A Perrakis; T K Sixma; K S Wilson; V S Lamzin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-07-01

3.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Structures of cytochrome c-549 and cytochrome c6 from the cyanobacterium Arthrospira maxima.

Authors:  M R Sawaya; D W Krogmann; A Serag; K K Ho; T O Yeates; C A Kerfeld
Journal:  Biochemistry       Date:  2001-08-07       Impact factor: 3.162

5.  Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana.

Authors:  Hirotaka Chida; Takeshi Yokoyama; Fumihiro Kawai; Aiko Nakazawa; Hideharu Akazaki; Yasuhiko Takayama; Takako Hirano; Kohei Suruga; Tadashi Satoh; Seiji Yamada; Ryu Kawachi; Satoru Unzai; Toshiyuki Nishio; Sam-Yong Park; Tadatake Oku
Journal:  FEBS Lett       Date:  2006-06-09       Impact factor: 4.124

6.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

7.  Roles of the disulfide bond and adjacent residues in determining the reduction potentials and stabilities of respiratory-type Rieske clusters.

Authors:  Ellen J Leggate; Judy Hirst
Journal:  Biochemistry       Date:  2005-05-10       Impact factor: 3.162

8.  Control of the redox potential of Pseudomonas aeruginosa cytochrome c551 through the Fe-Met coordination bond strength and pKa of a buried heme propionic acid side chain.

Authors:  Shin-ichi J Takayama; Shin-ichi Mikami; Norifumi Terui; Hajime Mita; Jun Hasegawa; Yoshihiro Sambongi; Yasuhiko Yamamoto
Journal:  Biochemistry       Date:  2005-04-12       Impact factor: 3.162

9.  Axial ligand replacement in horse heart cytochrome c by semisynthesis.

Authors:  A L Raphael; H B Gray
Journal:  Proteins       Date:  1989

10.  Two forms of cytochrome c6 in a single eukaryote.

Authors:  Jürgen Wastl; Saul Purton; Derek S Bendall; Christopher J Howe
Journal:  Trends Plant Sci       Date:  2004-10       Impact factor: 18.313

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  12 in total

1.  Cloning, expression and purification of cytochrome c(6) from the brown alga Hizikia fusiformis and complete X-ray diffraction analysis of the structure.

Authors:  Hideharu Akazaki; Fumihiro Kawai; Hirotaka Chida; Yuichirou Matsumoto; Mao Hirayama; Ken Hoshikawa; Satoru Unzai; Wataru Hakamata; Toshiyuki Nishio; Sam Yong Park; Tadatake Oku
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-07-05

Review 2.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

3.  Crystal structures of native cytochrome c6 from Thermosynechococcus elongatus in two different space groups and implications for its oligomerization.

Authors:  Sven Falke; Christian Feiler; Henry Chapman; Iosifina Sarrou
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-08-20       Impact factor: 1.056

4.  Structure analysis and characterization of the cytochrome c-554 from thermophilic green sulfur photosynthetic bacterium Chlorobaculum tepidum.

Authors:  Long-Jiang Yu; Masaki Unno; Yukihiro Kimura; Kasumi Yanagimoto; Hirozo Oh-oka; Zheng-Yu Wang-Otomo
Journal:  Photosynth Res       Date:  2013-09-20       Impact factor: 3.573

5.  Structural and kinetic studies of imidazole binding to two members of the cytochrome c (6) family reveal an important role for a conserved heme pocket residue.

Authors:  Badri S Rajagopal; Michael T Wilson; Derek S Bendall; Christopher J Howe; Jonathan A R Worrall
Journal:  J Biol Inorg Chem       Date:  2011-01-26       Impact factor: 3.358

6.  Structural basis for the oxidation of protein-bound sulfur by the sulfur cycle molybdohemo-enzyme sulfane dehydrogenase SoxCD.

Authors:  Ulrich Zander; Annette Faust; Björn U Klink; Daniele de Sanctis; Santosh Panjikar; Armin Quentmeier; Frank Bardischewsky; Cornelius G Friedrich; Axel J Scheidig
Journal:  J Biol Chem       Date:  2010-12-08       Impact factor: 5.157

7.  Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO, histamine, and imidazole complexes.

Authors:  Robert E Berry; Maxim N Shokhirev; Arthur Y W Ho; Fei Yang; Tatiana K Shokhireva; Hongjun Zhang; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

8.  Methionine ligand lability of type I cytochromes c: detection of ligand loss using protein film voltammetry.

Authors:  Tao Ye; Ravinder Kaur; F Timur Senguen; Lea V Michel; Kara L Bren; Sean J Elliott
Journal:  J Am Chem Soc       Date:  2008-05-03       Impact factor: 15.419

Review 9.  Design and fine-tuning redox potentials of metalloproteins involved in electron transfer in bioenergetics.

Authors:  Parisa Hosseinzadeh; Yi Lu
Journal:  Biochim Biophys Acta       Date:  2015-08-21

10.  Purification and characterization of cytochrome c(6) from Acaryochloris marina.

Authors:  Patrick D Bell; Yueyong Xin; Robert E Blankenship
Journal:  Photosynth Res       Date:  2009-08-13       Impact factor: 3.573

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