Literature DB >> 17625174

Solirubrobacter soli sp. nov., isolated from soil of a ginseng field.

Myung Kyum Kim1, Ju-Ryun Na1, Tae-Hoo Lee1, Wan-Taek Im2, Nak-Kyun Soung3, Deok-Chun Yang1.   

Abstract

A Gram-positive, non-spore-forming, rod-shaped and non-motile bacterium, strain Gsoil 355(T), was isolated from soil of a ginseng field in South Korea. In phylogenetic analyses based on 16S rRNA gene sequences, strain Gsoil 355(T) showed the highest levels of sequence similarity with respect to Solirubrobacter pauli B33D1(T) (97.4 %), Conexibacter woesei DSM 14684(T) (94.2 %) and Patulibacter minatonensis KV-614(T) (91.8 %). The strain possesses menaquinone MK-7(H(4)) and contains C(16 : 0) and C(18 : 0) omega 9c as the predominant fatty acids. The DNA G+C content is 71.5 mol%. On the basis of genotypic and phenotypic characteristics, strain Gsoil 355(T) represents a novel species of the genus Solirubrobacter, for which the name Solirubrobacter soli sp. nov. is proposed. The type strain is Gsoil 355(T) (=KCTC 12628(T)=LMG 23485(T)).

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Year:  2007        PMID: 17625174     DOI: 10.1099/ijs.0.64715-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  10 in total

1.  An assessment of microbial communities associated with surface mining-disturbed overburden.

Authors:  Dominique M Poncelet; Nicole Cavender; Teresa J Cutright; John M Senko
Journal:  Environ Monit Assess       Date:  2013-11-06       Impact factor: 2.513

2.  Distribution and isolation of strains belonging to the order Solirubrobacterales.

Authors:  Tamae Seki; Atsuko Matsumoto; Satoshi Ōmura; Yōko Takahashi
Journal:  J Antibiot (Tokyo)       Date:  2015-07-01       Impact factor: 2.649

3.  1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Authors:  Supratim Mukherjee; Rekha Seshadri; Neha J Varghese; Emiley A Eloe-Fadrosh; Jan P Meier-Kolthoff; Markus Göker; R Cameron Coates; Michalis Hadjithomas; Georgios A Pavlopoulos; David Paez-Espino; Yasuo Yoshikuni; Axel Visel; William B Whitman; George M Garrity; Jonathan A Eisen; Philip Hugenholtz; Amrita Pati; Natalia N Ivanova; Tanja Woyke; Hans-Peter Klenk; Nikos C Kyrpides
Journal:  Nat Biotechnol       Date:  2017-06-12       Impact factor: 54.908

4.  Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil.

Authors:  Sindy Hunger; Oliver Schmidt; Maik Hilgarth; Marcus A Horn; Steffen Kolb; Ralf Conrad; Harold L Drake
Journal:  Appl Environ Microbiol       Date:  2011-04-08       Impact factor: 4.792

5.  Microbiomes of ant castes implicate new microbial roles in the fungus-growing ant Trachymyrmex septentrionalis.

Authors:  Heather D Ishak; Jessica L Miller; Ruchira Sen; Scot E Dowd; Eli Meyer; Ulrich G Mueller
Journal:  Sci Rep       Date:  2011-12-22       Impact factor: 4.379

6.  High-quality draft genome sequence of Gaiella occulta isolated from a 150 meter deep mineral water borehole and comparison with the genome sequences of other deep-branching lineages of the phylum Actinobacteria.

Authors:  Rita Severino; Hugo J C Froufe; Cristina Barroso; Luciana Albuquerque; Alexandre Lobo-da-Cunha; Milton S da Costa; Conceição Egas
Journal:  Microbiologyopen       Date:  2019-04-11       Impact factor: 3.139

7.  New genus-specific primers for PCR identification of Rubrobacter strains.

Authors:  Jean Franco Castro; Imen Nouioui; Juan A Asenjo; Barbara Andrews; Alan T Bull; Michael Goodfellow
Journal:  Antonie Van Leeuwenhoek       Date:  2019-08-12       Impact factor: 2.271

8.  Microbial communities associated with mounds of the Orange-footed scrubfowl Megapodius reinwardt.

Authors:  Karla Cardenas Gomez; Alea Rose; Karen Susanne Gibb; Keith A Christian
Journal:  PeerJ       Date:  2022-07-25       Impact factor: 3.061

9.  Microbial communities associated with wet flue gas desulfurization systems.

Authors:  Bryan P Brown; Shannon R Brown; John M Senko
Journal:  Front Microbiol       Date:  2012-11-30       Impact factor: 5.640

10.  The effect of freeze-thaw conditions on arctic soil bacterial communities.

Authors:  Niraj Kumar; Paul Grogan; Haiyan Chu; Casper T Christiansen; Virginia K Walker
Journal:  Biology (Basel)       Date:  2013-02-28
  10 in total

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