Literature DB >> 1762148

Poly[d(A.T)] and other synthetic polydeoxynucleotides containing oligoadenosine tracts form nucleosomes easily.

H L Puhl1, S R Gudibande, M J Behe.   

Abstract

Synthetic double-stranded polydeoxynucleotides of the general form poly[d(AnT).d(ATn)], with n ranging from 3 to 11, have been synthesized. The conformation of the polymers was investigated by circular dichroism spectroscopy and the polymers were examined for their ability to form nucleosomes. Although spectra show that a circular dichroism band characteristic of poly[d(A.T)] appears in the polymer family for n greater than 7, we demonstrate that even polynucleotides with the longest tracts of contiguous adenosine bases (n = 11) are able to form nucleosomes when reconstituted using a histone exchange procedure. Thus resistance to nucleosome formation does not coincide with the appearance of features similar to that of poly[d(A.T)] over the bulk of the nucleosomal DNA. Furthermore, we show that an approximately 150 base-pair poly[d(A.T)] itself, long thought to be refractory to nucleosome formation, can assemble into such a protein-DNA complex when reconstituted by a low-salt exchange procedure. Competitive assays show that the homopolymer reconstitutes about as well as heterogeneous sequences DNA. Our work, therefore, suggests that highly adenosine-rich sequences in vivo apparently have a function that operates at a level other than that of nucleosome structure.

Entities:  

Mesh:

Substances:

Year:  1991        PMID: 1762148     DOI: 10.1016/0022-2836(91)90598-z

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  11 in total

1.  Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo.

Authors:  B Suter; G Schnappauf; F Thoma
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

2.  Wrapping of genomic polydA.polydT tracts around nucleosome core particles.

Authors:  K R Fox
Journal:  Nucleic Acids Res       Date:  1992-03-25       Impact factor: 16.971

3.  DNA triple-helix formation on nucleosome-bound poly(dA).poly(dT) tracts.

Authors:  P M Brown; K R Fox
Journal:  Biochem J       Date:  1998-07-15       Impact factor: 3.857

4.  Chromatin structure of the Saccharomyces cerevisiae DNA topoisomerase I promoter in different growth phases.

Authors:  L Rubbi; G Camilloni; M Caserta; E Di Mauro; S Venditti
Journal:  Biochem J       Date:  1997-12-01       Impact factor: 3.857

5.  Different roles for abf1p and a T-rich promoter element in nucleosome organization of the yeast RPS28A gene.

Authors:  R F Lascaris; E Groot; P B Hoen; W H Mager; R J Planta
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

6.  Large-amplitude picosecond anisotropy decay of the intrinsic fluorescence of double-stranded DNA.

Authors:  S Georghiou; T D Bradrick; A Philippetis; J M Beechem
Journal:  Biophys J       Date:  1996-04       Impact factor: 4.033

7.  Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA) small middle dotpoly(dT) tracts in vivo.

Authors:  M Shimizu; T Mori; T Sakurai; H Shindo
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

8.  An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes.

Authors:  M J Behe
Journal:  Nucleic Acids Res       Date:  1995-02-25       Impact factor: 16.971

9.  Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

Authors:  V Iyer; K Struhl
Journal:  EMBO J       Date:  1995-06-01       Impact factor: 11.598

10.  Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition.

Authors:  Yue Zhou; Jeffrey W Bizzaro; Kenneth A Marx
Journal:  BMC Genomics       Date:  2004-12-14       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.