Literature DB >> 17617817

Methods for improving the visualization and deconvolution of isotopic signals.

Guillaume Tcherkez1, Jaleh Ghashghaie, Howard Griffiths.   

Abstract

Stable isotopes and their associated mechanistic frameworks have provided the means to model biological transformations from inorganic sources to organic sinks, and their impact on long-term terrestrial carbon reservoirs. However, stable isotopes have also the potential to diagnose the mechanisms by which biological systems operate, when using 'multidimensional' analyses of the isotopic outputs. For this purpose, we suggest that isotopic signals may be treated as mathematical vectors to reveal their interrelationships. These visualizations may be achieved, thanks to multidimensional representations (the 'isotopology' method), or by appreciating the colinearity of isotopic vectors to develop a clustering analysis (the 'isotopomic' method) similar to that used in molecular biology. Both methods converge to the same mathematical form, i.e. both lead to a covariation approach. Using simple practical examples, we argue that such procedures allow the deconvolution of plant biological systems by revealing the hierarchy of contributory physiological processes.

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Year:  2007        PMID: 17617817     DOI: 10.1111/j.1365-3040.2007.01687.x

Source DB:  PubMed          Journal:  Plant Cell Environ        ISSN: 0140-7791            Impact factor:   7.228


  4 in total

1.  In folio respiratory fluxomics revealed by 13C isotopic labeling and H/D isotope effects highlight the noncyclic nature of the tricarboxylic acid "cycle" in illuminated leaves.

Authors:  Guillaume Tcherkez; Aline Mahé; Paul Gauthier; Caroline Mauve; Elizabeth Gout; Richard Bligny; Gabriel Cornic; Michael Hodges
Journal:  Plant Physiol       Date:  2009-08-12       Impact factor: 8.340

2.  Respiratory metabolism of illuminated leaves depends on CO2 and O2 conditions.

Authors:  Guillaume Tcherkez; Richard Bligny; Elizabeth Gout; Aline Mahé; Michael Hodges; Gabriel Cornic
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-09       Impact factor: 11.205

3.  Radiocarbon analysis of modern olive wood raises doubts concerning a crucial piece of evidence in dating the Santorini eruption.

Authors:  Yael Ehrlich; Lior Regev; Elisabetta Boaretto
Journal:  Sci Rep       Date:  2018-08-09       Impact factor: 4.379

4.  Stable carbon isotope diagnostics of mammalian metabolism, a high-resolution isotomics approach using amino acid carboxyl groups.

Authors:  Brian Fry; James F Carter
Journal:  PLoS One       Date:  2019-10-28       Impact factor: 3.240

  4 in total

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