Literature DB >> 17616554

A more efficient RNAi inducible system for tight regulation of gene expression in mammalian cells and xenograft animals.

Jing Zhang1, Cuiying Wang, Ning Ke, Josh Bliesath, John Chionis, Qiuchen S He, Qi-Xiang Li, Jon E Chatterton, Flossie Wong-Staal, Demin Zhou.   

Abstract

Two types of tetracycline-controlled inducible RNAi expression systems have been developed that generally utilize multiple tetracycline operators (TetOs) or repressor fusion proteins to overcome the siRNA leakiness. Here, we report a novel system that overexpresses the tetracycline repressor (TetR) via a bicistronic construct to control siRNA expression. The high level of TetR expression ensures that the inducible promoter is tightly bound, with minimal basal transcription, allowing for regulation solely dependent on TetR rather than a TetR fusion protein via a more complicated mechanism. At the same time, this system contains only a single TetO, thus minimizing the promoter impairment occurring in existing systems due to the incorporation of multiple TetOs, and maximizing the siRNA expression upon induction. In addition, this system combines all the components required for regulation of siRNA expression into a single lentiviral vector, so that stable cell lines can be generated by a single transduction and selection, with significant reduction in time and cost. Taken together, this all-in-one lentiviral vector with the feature of TetR overexpression provides a unique and more efficient tool for conditional gene knockdown that has wide applications. We have demonstrated the high degree of robustness and versatility of this system as applied to several mammalian cells and xenograft animals.

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Year:  2007        PMID: 17616554      PMCID: PMC1924899          DOI: 10.1261/rna.520707

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  36 in total

Review 1.  Survey and summary: transcription by RNA polymerases I and III.

Authors:  M R Paule; R J White
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

2.  U6 promoter-driven siRNAs with four uridine 3' overhangs efficiently suppress targeted gene expression in mammalian cells.

Authors:  Makoto Miyagishi; Kazunari Taira
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

3.  RNA interference in mammalian cells using siRNAs synthesized with T7 RNA polymerase.

Authors:  Olivier Donzé; Didier Picard
Journal:  Nucleic Acids Res       Date:  2002-05-15       Impact factor: 16.971

4.  A DNA vector-based RNAi technology to suppress gene expression in mammalian cells.

Authors:  Guangchao Sui; Christina Soohoo; El Bachir Affar; Frédérique Gay; Yujiang Shi; William C Forrester; Yang Shi
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

Review 5.  Studying gene function in eukaryotes by conditional gene inactivation.

Authors:  Manfred Gossen; Hermann Bujard
Journal:  Annu Rev Genet       Date:  2002-06-11       Impact factor: 16.830

6.  A system for stable expression of short interfering RNAs in mammalian cells.

Authors:  Thijn R Brummelkamp; René Bernards; Reuven Agami
Journal:  Science       Date:  2002-03-21       Impact factor: 47.728

7.  Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells.

Authors:  Nan Sook Lee; Taikoh Dohjima; Gerhard Bauer; Haitang Li; Ming-Jie Li; Ali Ehsani; Paul Salvaterra; John Rossi
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

8.  A new inducible RNAi xenograft model for assessing the staged tumor response to mTOR silencing.

Authors:  Ning Ke; Demin Zhou; Jon E Chatterton; Guohong Liu; John Chionis; Jing Zhang; Lindsey Tsugawa; Rebecca Lynn; Dehua Yu; Bernd Meyhack; Flossie Wong-Staal; Qi-Xiang Li
Journal:  Exp Cell Res       Date:  2006-09-10       Impact factor: 3.905

9.  siRNA-mediated gene silencing in vitro and in vivo.

Authors:  Haibin Xia; Qinwen Mao; Henry L Paulson; Beverly L Davidson
Journal:  Nat Biotechnol       Date:  2002-09-16       Impact factor: 54.908

10.  Tissue-specific RNA interference in postimplantation mouse embryos with endoribonuclease-prepared short interfering RNA.

Authors:  Federico Calegari; Wulf Haubensak; Dun Yang; Wieland B Huttner; Frank Buchholz
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

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  12 in total

1.  A method for detecting and preventing negative RNA interference in preparation of lentiviral vectors for siRNA delivery.

Authors:  Demin Zhou; Jing Zhang; Cuiying Wang; Joshua R Bliesath; Qiuchen He; Dehua Yu; Zhang Li-He; Flossie Wong-Staal
Journal:  RNA       Date:  2009-02-25       Impact factor: 4.942

2.  The construction of siRNA plasmid targeting mouse HIF-1alpha and in vitro study of its inhibition effect.

Authors:  Zhen-Yu Ding; Ze-Gui Li; Yi-Zhan Xing; Hua Ji; Hong-Li Li; Zhi-Jie Chang
Journal:  Neurosci Bull       Date:  2009-06       Impact factor: 5.203

3.  Strand antagonism in RNAi: an explanation of differences in potency between intracellularly expressed siRNA and shRNA.

Authors:  Xin Jin; Tingting Sun; Chuanke Zhao; Yongxiang Zheng; Yufan Zhang; Weijing Cai; Qiuchen He; Kaz Taira; Lihe Zhang; Demin Zhou
Journal:  Nucleic Acids Res       Date:  2011-10-28       Impact factor: 16.971

4.  Modeling recursive RNA interference.

Authors:  Wallace F Marshall
Journal:  PLoS Comput Biol       Date:  2008-09-19       Impact factor: 4.475

5.  Development of a multipurpose GATEWAY-based lentiviral tetracycline-regulated conditional RNAi system (GLTR).

Authors:  Reinhard Sigl; Christian Ploner; Giridhar Shivalingaiah; Reinhard Kofler; Stephan Geley
Journal:  PLoS One       Date:  2014-05-19       Impact factor: 3.240

6.  Elevated expression of AKR1C3 increases resistance of cancer cells to ionizing radiation via modulation of oxidative stress.

Authors:  Wei Xiong; Jing Zhao; Hongliang Yu; Xiaoying Li; Shaoqian Sun; Yi Li; Qing Xia; Chuanling Zhang; Qiuchen He; Xianshu Gao; Lihe Zhang; Demin Zhou
Journal:  PLoS One       Date:  2014-11-24       Impact factor: 3.240

7.  c-Met targeting enhances the effect of irradiation and chemical agents against malignant colon cells harboring a KRAS mutation.

Authors:  Yingbo Li; Jinxi Wang; Xing Gao; Weihua Han; Yongxiang Zheng; Huan Xu; Chuanling Zhang; Qiuchen He; Lihe Zhang; Zhongxin Li; Demin Zhou
Journal:  PLoS One       Date:  2014-11-26       Impact factor: 3.240

8.  Systematic transfer of prokaryotic sensors and circuits to mammalian cells.

Authors:  Brynne C Stanton; Velia Siciliano; Amar Ghodasara; Liliana Wroblewska; Kevin Clancy; Axel C Trefzer; Jonathan D Chesnut; Ron Weiss; Christopher A Voigt
Journal:  ACS Synth Biol       Date:  2014-11-20       Impact factor: 5.110

9.  Persistence of RNAi-Mediated Knockdown in Drosophila Complicates Mosaic Analysis Yet Enables Highly Sensitive Lineage Tracing.

Authors:  Justin A Bosch; Taryn M Sumabat; Iswar K Hariharan
Journal:  Genetics       Date:  2016-03-16       Impact factor: 4.562

10.  Transferring a synthetic gene circuit from yeast to mammalian cells.

Authors:  Dmitry Nevozhay; Tomasz Zal; Gábor Balázsi
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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