Literature DB >> 17609383

Identifying important structural characteristics of arsenic resistance proteins by using designed three-stranded coiled coils.

Debra S Touw1, Christer E Nordman, Jeanne A Stuckey, Vincent L Pecoraro.   

Abstract

Arsenic, a contaminant of water supplies worldwide, is one of the most toxic inorganic ions. Despite arsenic's health impact, there is relatively little structural detail known about its interactions with proteins. Bacteria such as Escherichia coli have evolved arsenic resistance using the Ars operon that is regulated by ArsR, a repressor protein that dissociates from DNA when As(III) binds. This protein undergoes a critical conformational change upon binding As(III) with three cysteine residues. Unfortunately, structures of ArsR with or without As(III) have not been reported. Alternatively, de novo designed peptides can bind As(III) in an endo configuration within a thiolate-rich environment consistent with that proposed for both ArsR and ArsD. We report the structure of the As(III) complex of Coil Ser L9C to a 1.8-A resolution, providing x-ray characterization of As(III) in a Tris thiolate protein environment and allowing a structural basis by which to understand arsenated ArsR.

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Year:  2007        PMID: 17609383      PMCID: PMC1924535          DOI: 10.1073/pnas.0701979104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  52 in total

1.  Arsenic(III)-cysteine interactions stabilize three-helix bundles in aqueous solution.

Authors:  B T Farrer; C P McClure; J E Penner-Hahn; V L Pecoraro
Journal:  Inorg Chem       Date:  2000-11-27       Impact factor: 5.165

2.  Sliding helix and change of coordination geometry in a model di-MnII protein.

Authors:  William F DeGrado; Luigi Di Costanzo; Silvano Geremia; Angela Lombardi; Vincenzo Pavone; Lucio Randaccio
Journal:  Angew Chem Int Ed Engl       Date:  2003-01-27       Impact factor: 15.336

3.  Coiled coils at the edge of configurational heterogeneity. Structural analyses of parallel and antiparallel homotetrameric coiled coils reveal configurational sensitivity to a single solvent-exposed amino acid substitution.

Authors:  Maneesh K Yadav; Luke J Leman; Daniel J Price; Charles L Brooks; C David Stout; M Reza Ghadiri
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

4.  Thermodynamics of the As(III)-thiol interaction: arsenite and monomethylarsenite complexes with glutathione, dihydrolipoic acid, and other thiol ligands.

Authors:  Anne M Spuches; Harriet G Kruszyna; Anne M Rich; Dean E Wilcox
Journal:  Inorg Chem       Date:  2005-04-18       Impact factor: 5.165

5.  Crystal structures of a single coiled-coil peptide in two oligomeric states reveal the basis for structural polymorphism.

Authors:  L Gonzalez; R A Brown; D Richardson; T Alber
Journal:  Nat Struct Biol       Date:  1996-12

6.  Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes.

Authors:  J W Ponder; F M Richards
Journal:  J Mol Biol       Date:  1987-02-20       Impact factor: 5.469

7.  The role of arsenic-thiol interactions in metalloregulation of the ars operon.

Authors:  W Shi; J Dong; R A Scott; M Y Ksenzenko; B P Rosen
Journal:  J Biol Chem       Date:  1996-04-19       Impact factor: 5.157

8.  An arsenic metallochaperone for an arsenic detoxification pump.

Authors:  Yung-Feng Lin; Adrian R Walmsley; Barry P Rosen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

9.  Peptidic models for the binding of Pb(II), Bi(III) and Cd(II) to mononuclear thiolate binding sites.

Authors:  Manolis Matzapetakis; Debdip Ghosh; Tsu-Chien Weng; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Biol Inorg Chem       Date:  2006-07-20       Impact factor: 3.358

10.  Spectroscopic identification of different types of copper centers generated in synthetic four-helix bundle proteins.

Authors:  Robert Schnepf; Wolfgang Haehnel; Karl Wieghardt; Peter Hildebrandt
Journal:  J Am Chem Soc       Date:  2004-11-10       Impact factor: 15.419

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  41 in total

1.  Control of enzyme reaction by a designed metal-ion-dependent α-helical coiled-coil protein.

Authors:  Shigeo Murase; Sonoko Ishino; Yoshizumi Ishino; Toshiki Tanaka
Journal:  J Biol Inorg Chem       Date:  2012-03-31       Impact factor: 3.358

2.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

3.  Noncoded Amino Acids in de Novo Metalloprotein Design: Controlling Coordination Number and Catalysis.

Authors:  Karl J Koebke; Vincent L Pecoraro
Journal:  Acc Chem Res       Date:  2019-04-01       Impact factor: 22.384

4.  Lead(II) Binding in Natural and Artificial Proteins.

Authors:  Virginia Cangelosi; Leela Ruckthong; Vincent L Pecoraro
Journal:  Met Ions Life Sci       Date:  2017-04-10

Review 5.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

6.  Incorporation of second coordination sphere D-amino acids alters Cd(II) geometries in designed thiolate-rich proteins.

Authors:  Leela Ruckthong; Aniruddha Deb; Lars Hemmingsen; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

7.  A protein engineered to bind uranyl selectively and with femtomolar affinity.

Authors:  Lu Zhou; Mike Bosscher; Changsheng Zhang; Salih Ozçubukçu; Liang Zhang; Wen Zhang; Charles J Li; Jianzhao Liu; Mark P Jensen; Luhua Lai; Chuan He
Journal:  Nat Chem       Date:  2014-01-26       Impact factor: 24.427

8.  Design of thiolate rich metal binding sites within a peptidic framework.

Authors:  Marek Łuczkowski; Monika Stachura; Virgil Schirf; Borries Demeler; Lars Hemmingsen; Vincent L Pecoraro
Journal:  Inorg Chem       Date:  2008-12-01       Impact factor: 5.165

9.  Harnessing natures ability to control metal ion coordination geometry using de novo designed peptides.

Authors:  Anna F A Peacock; Olga Iranzo; Vincent L Pecoraro
Journal:  Dalton Trans       Date:  2009-01-16       Impact factor: 4.390

10.  Probing the coordination environment of the human copper chaperone HAH1: characterization of Hg(II)-bridged homodimeric species in solution.

Authors:  Marek Łuczkowski; Brian A Zeider; Alia V H Hinz; Monika Stachura; Saumen Chakraborty; Lars Hemmingsen; David L Huffman; Vincent L Pecoraro
Journal:  Chemistry       Date:  2013-05-15       Impact factor: 5.236

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