Literature DB >> 17603003

A universal plate format for increased throughput of assays that monitor multiple aminoacyl transfer RNA synthetase activities.

Kirk Beebe1, William Waas, Zhanna Druzina, Min Guo, Paul Schimmel.   

Abstract

Aminoacyl transfer RNA (tRNA) synthetases are intensely studied enzymes because of their importance in the establishment of the genetic code and their connection to disease and medicine. During the advancement of this field, several assays were developed. Despite many innovations, the sensitivity, simplicity, and reliability of the radiometric assays (which were among the first to be developed) have ensured their continued use. Four activities are measured by these assays: active site titration, amino acid activation, aminoacylation, and posttransfer editing (deacylation). In an effort to maintain the advantage of these assays while enhancing throughput, reducing waste, and improving data quality, a universal 96-well filter plate format was developed. This format facilitates the assays for all four of the widely studied activities.

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Year:  2007        PMID: 17603003      PMCID: PMC3833075          DOI: 10.1016/j.ab.2007.05.013

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  34 in total

Review 1.  Inhibitors of aminoacyl-tRNA synthetases as novel anti-infectives.

Authors:  J Tao; P Schimmel
Journal:  Expert Opin Investig Drugs       Date:  2000-08       Impact factor: 6.206

2.  Modulation of tRNAAla identity by inorganic pyrophosphatase.

Authors:  Alexey D Wolfson; Olke C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

3.  Enlarging the amino acid set of Escherichia coli by infiltration of the valine coding pathway.

Authors:  V Döring; H D Mootz; L A Nangle; T L Hendrickson; V de Crécy-Lagard; P Schimmel; P Marlière
Journal:  Science       Date:  2001-04-20       Impact factor: 47.728

4.  A homogeneous method to measure aminoacyl-tRNA synthetase aminoacylation activity using scintillation proximity assay technology.

Authors:  R Macarrón; L Mensah; C Cid; C Carranza; N Benson; A J Pope; E Díez
Journal:  Anal Biochem       Date:  2000-09-10       Impact factor: 3.365

5.  Global effects of mistranslation from an editing defect in mammalian cells.

Authors:  Leslie A Nangle; Candace M Motta; Paul Schimmel
Journal:  Chem Biol       Date:  2006-10

6.  The EntF and EntE adenylation domains of Escherichia coli enterobactin synthetase: sequestration and selectivity in acyl-AMP transfers to thiolation domain cosubstrates.

Authors:  D E Ehmann; C A Shaw-Reid; H C Losey; C T Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

7.  Purification and properties of isoleucyl ribonucleic acid synthetase from Escherichia coli.

Authors:  A N Baldwin; P Berg
Journal:  J Biol Chem       Date:  1966-02-25       Impact factor: 5.157

8.  Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem.

Authors:  A Dock-Bregeon; R Sankaranarayanan; P Romby; J Caillet; M Springer; B Rees; C S Francklyn; C Ehresmann; D Moras
Journal:  Cell       Date:  2000-12-08       Impact factor: 41.582

9.  A domain for editing by an archaebacterial tRNA synthetase.

Authors:  Kirk Beebe; Eve Merriman; Lluis Ribas De Pouplana; Paul Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-12       Impact factor: 11.205

10.  Elucidation of tRNA-dependent editing by a class II tRNA synthetase and significance for cell viability.

Authors:  Kirk Beebe; Lluis Ribas De Pouplana; Paul Schimmel
Journal:  EMBO J       Date:  2003-02-03       Impact factor: 11.598

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  25 in total

1.  p23H implicated as cis/trans regulator of AlaXp-directed editing for mammalian cell homeostasis.

Authors:  Mir Hussain Nawaz; Eve Merriman; Xiang-Lei Yang; Paul Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-01       Impact factor: 11.205

2.  Optimization of Methionyl tRNA-Synthetase Inhibitors for Treatment of Cryptosporidium Infection.

Authors:  Frederick S Buckner; Ranae M Ranade; J Robert Gillespie; Sayaka Shibata; Matthew A Hulverson; Zhongsheng Zhang; Wenlin Huang; Ryan Choi; Christophe L M J Verlinde; Wim G J Hol; Atsuko Ochida; Yuichiro Akao; Robert K M Choy; Wesley C Van Voorhis; Sam L M Arnold; Rajiv S Jumani; Christopher D Huston; Erkang Fan
Journal:  Antimicrob Agents Chemother       Date:  2019-03-27       Impact factor: 5.191

3.  In Vivo Biosynthesis of a β-Amino Acid-Containing Protein.

Authors:  Clarissa Melo Czekster; Wesley E Robertson; Allison S Walker; Dieter Söll; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2016-04-18       Impact factor: 15.419

4.  tRNA-controlled nuclear import of a human tRNA synthetase.

Authors:  Guangsen Fu; Tao Xu; Yi Shi; Na Wei; Xiang-Lei Yang
Journal:  J Biol Chem       Date:  2012-01-30       Impact factor: 5.157

5.  Deficiencies in tRNA synthetase editing activity cause cardioproteinopathy.

Authors:  Ye Liu; Jakob S Satz; My-Nuong Vo; Leslie A Nangle; Paul Schimmel; Susan L Ackerman
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-24       Impact factor: 11.205

6.  Chemical inhibition of prometastatic lysyl-tRNA synthetase-laminin receptor interaction.

Authors:  Dae Gyu Kim; Jin Young Lee; Nam Hoon Kwon; Pengfei Fang; Qian Zhang; Jing Wang; Nicolas L Young; Min Guo; Hye Young Cho; Ameeq Ul Mushtaq; Young Ho Jeon; Jin Woo Choi; Jung Min Han; Ho Woong Kang; Jae Eun Joo; Youn Hur; Wonyoung Kang; Heekyoung Yang; Do-Hyun Nam; Mi-Sook Lee; Jung Weon Lee; Eun-Sook Kim; Aree Moon; Kibom Kim; Doyeun Kim; Eun Joo Kang; Youngji Moon; Kyung Hee Rhee; Byung Woo Han; Jee Sun Yang; Gyoonhee Han; Won Suk Yang; Cheolju Lee; Ming-Wei Wang; Sunghoon Kim
Journal:  Nat Chem Biol       Date:  2013-11-10       Impact factor: 15.040

7.  Crystal structure of human Seryl-tRNA synthetase and Ser-SA complex reveals a molecular lever specific to higher eukaryotes.

Authors:  Xiaoling Xu; Yi Shi; Xiang-Lei Yang
Journal:  Structure       Date:  2013-10-03       Impact factor: 5.006

8.  Crystal structures and biochemical analyses suggest a unique mechanism and role for human glycyl-tRNA synthetase in Ap4A homeostasis.

Authors:  Rey-Ting Guo; Yeeting E Chong; Min Guo; Xiang-Lei Yang
Journal:  J Biol Chem       Date:  2009-08-26       Impact factor: 5.157

9.  Plant tumour biocontrol agent employs a tRNA-dependent mechanism to inhibit leucyl-tRNA synthetase.

Authors:  Shaileja Chopra; Andrés Palencia; Cornelia Virus; Ashutosh Tripathy; Brenda R Temple; Adrian Velazquez-Campoy; Stephen Cusack; John S Reader
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  CMT disease severity correlates with mutation-induced open conformation of histidyl-tRNA synthetase, not aminoacylation loss, in patient cells.

Authors:  David Blocquel; Litao Sun; Zaneta Matuszek; Sheng Li; Thomas Weber; Bernhard Kuhle; Grace Kooi; Na Wei; Jonathan Baets; Tao Pan; Paul Schimmel; Xiang-Lei Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-09       Impact factor: 11.205

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