Literature DB >> 11313495

Enlarging the amino acid set of Escherichia coli by infiltration of the valine coding pathway.

V Döring1, H D Mootz, L A Nangle, T L Hendrickson, V de Crécy-Lagard, P Schimmel, P Marlière.   

Abstract

Aminoacyl transfer RNA (tRNA) synthetases establish the rules of the genetic code by catalyzing the aminoacylation of tRNAs. For some synthetases, accuracy depends critically on an editing function at a site distinct from the aminoacylation site. Mutants of Escherichia coli that incorrectly charge tRNA(Val) with cysteine were selected after random mutagenesis of the whole chromosome. All mutations obtained were located in the editing site of valyl-tRNA synthetase. More than 20% of the valine in cellular proteins from such an editing mutant organism could be replaced with the noncanonical aminobutyrate, sterically similar to cysteine. Thus, the editing function may have played a central role in restricting the genetic code to 20 amino acids. Disabling this editing function offers a powerful approach for diversifying the chemical composition of proteins and for emulating evolutionary stages of ambiguous translation.

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Year:  2001        PMID: 11313495     DOI: 10.1126/science.1057718

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  59 in total

1.  Blocking site-to-site translocation of a misactivated amino acid by mutation of a class I tRNA synthetase.

Authors:  Anthony C Bishop; Tyzoon K Nomanbhoy; Paul Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-08       Impact factor: 11.205

Review 2.  Aminoacyl-tRNA synthetases: versatile players in the changing theater of translation.

Authors:  Christopher Francklyn; John J Perona; Joern Puetz; Ya-Ming Hou
Journal:  RNA       Date:  2002-11       Impact factor: 4.942

3.  Interstice mutations that block site-to-site translocation of a misactivated amino acid bound to a class I tRNA synthetase.

Authors:  Anthony C Bishop; Kirk Beebe; Paul R Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-06       Impact factor: 11.205

4.  Artificially ambiguous genetic code confers growth yield advantage.

Authors:  V Pezo; D Metzgar; T L Hendrickson; W F Waas; S Hazebrouck; V Döring; P Marlière; P Schimmel; V De Crécy-Lagard
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-26       Impact factor: 11.205

5.  Ancestral AlaX editing enzymes for control of genetic code fidelity are not tRNA-specific.

Authors:  Eva Maria Novoa; Oscar Vargas-Rodriguez; Stefanie Lange; Yuki Goto; Hiroaki Suga; Karin Musier-Forsyth; Lluís Ribas de Pouplana
Journal:  J Biol Chem       Date:  2015-02-27       Impact factor: 5.157

6.  Binding of misacylated tRNAs to the ribosomal A site.

Authors:  Taraka Dale; Olke C Uhlenbeck
Journal:  RNA       Date:  2005-11       Impact factor: 4.942

7.  De novo design of defined helical bundles in membrane environments.

Authors:  Basar Bilgiçer; Krishna Kumar
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-14       Impact factor: 11.205

8.  Mutational unmasking of a tRNA-dependent pathway for preventing genetic code ambiguity.

Authors:  Amy M Williams; Susan A Martinis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

9.  Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation.

Authors:  Ziwei Liu; Oscar Vargas-Rodriguez; Yuki Goto; Eva Maria Novoa; Lluís Ribas de Pouplana; Hiroaki Suga; Karin Musier-Forsyth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

Review 10.  DNA polymerases and aminoacyl-tRNA synthetases: shared mechanisms for ensuring the fidelity of gene expression.

Authors:  Christopher S Francklyn
Journal:  Biochemistry       Date:  2008-10-14       Impact factor: 3.162

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