Literature DB >> 17599241

Development of in silico models for human liver microsomal stability.

Pil H Lee1, Lourdes Cucurull-Sanchez, Jing Lu, Yuhua J Du.   

Abstract

We developed highly predictive classification models for human liver microsomal (HLM) stability using the apparent intrinsic clearance (CL(int, app)) as the end point. HLM stability has been shown to be an important factor related to the metabolic clearance of a compound. Robust in silico models that predict metabolic clearance are very useful in early drug discovery stages to optimize the compound structure and to select promising leads to avoid costly drug development failures in later stages. Using Random Forest and Bayesian classification methods with MOE, E-state descriptors, ADME Keys, and ECFP_6 fingerprints, various highly predictive models were developed. The best performance of the models shows 80 and 75% prediction accuracy for the test and validation sets, respectively. A detailed analysis of results will be shown, including an assessment of the prediction confidence, the significant descriptors, and the application of these models to drug discovery projects.

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Year:  2007        PMID: 17599241     DOI: 10.1007/s10822-007-9124-0

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  4 in total

Review 1.  Applied introduction to multivariate methods used in drug discovery.

Authors:  Eugenia Migliavacca
Journal:  Mini Rev Med Chem       Date:  2003-12       Impact factor: 3.862

2.  Random forest: a classification and regression tool for compound classification and QSAR modeling.

Authors:  Vladimir Svetnik; Andy Liaw; Christopher Tong; J Christopher Culberson; Robert P Sheridan; Bradley P Feuston
Journal:  J Chem Inf Comput Sci       Date:  2003 Nov-Dec

3.  Using extended-connectivity fingerprints with Laplacian-modified Bayesian analysis in high-throughput screening follow-up.

Authors:  David Rogers; Robert D Brown; Mathew Hahn
Journal:  J Biomol Screen       Date:  2005-09-16

Review 4.  Methods for predicting human drug metabolism.

Authors:  Larry J Jolivette; Sean Ekins
Journal:  Adv Clin Chem       Date:  2007       Impact factor: 5.394

  4 in total
  11 in total

Review 1.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

2.  Development of QSAR models for microsomal stability: identification of good and bad structural features for rat, human and mouse microsomal stability.

Authors:  Yongbo Hu; Ray Unwalla; R Aldrin Denny; Jack Bikker; Li Di; Christine Humblet
Journal:  J Comput Aided Mol Des       Date:  2009-11-24       Impact factor: 3.686

3.  An integrated drug-likeness study for bicyclic privileged structures: from physicochemical properties to in vitro ADME properties.

Authors:  Chunyan Han; Jinlan Zhang; Mingyue Zheng; Yao Xiao; Yan Li; Gang Liu
Journal:  Mol Divers       Date:  2011-05-03       Impact factor: 2.943

4.  A probabilistic method to report predictions from a human liver microsomes stability QSAR model: a practical tool for drug discovery.

Authors:  Ignacio Aliagas; Alberto Gobbi; Timothy Heffron; Man-Ling Lee; Daniel F Ortwine; Mark Zak; S Cyrus Khojasteh
Journal:  J Comput Aided Mol Des       Date:  2015-02-24       Impact factor: 3.686

5.  In silico Modeling and Toxicity Profiling of a Set of Quinoline Derivatives as c-MET Inhibitors in the treatment of Human Tumors.

Authors:  Gülçin Tuğcu; Filiz Esra Önen Bayram; Hande Sipahi
Journal:  Turk J Pharm Sci       Date:  2021-12-31

Review 6.  Considerations for Improving Metabolism Predictions for In Vitro to In Vivo Extrapolation.

Authors:  Marjory Moreau; Pankajini Mallick; Marci Smeltz; Saad Haider; Chantel I Nicolas; Salil N Pendse; Jeremy A Leonard; Matthew W Linakis; Patrick D McMullen; Rebecca A Clewell; Harvey J Clewell; Miyoung Yoon
Journal:  Front Toxicol       Date:  2022-04-29

Review 7.  Considerations and recent advances in QSAR models for cytochrome P450-mediated drug metabolism prediction.

Authors:  Haiyan Li; Jin Sun; Xiaowen Fan; Xiaofan Sui; Lan Zhang; Yongjun Wang; Zhonggui He
Journal:  J Comput Aided Mol Des       Date:  2008-06-24       Impact factor: 3.686

8.  Predicting Mouse Liver Microsomal Stability with "Pruned" Machine Learning Models and Public Data.

Authors:  Alexander L Perryman; Thomas P Stratton; Sean Ekins; Joel S Freundlich
Journal:  Pharm Res       Date:  2015-09-28       Impact factor: 4.200

9.  Computational tools and resources for metabolism-related property predictions. 2. Application to prediction of half-life time in human liver microsomes.

Authors:  Alexey V Zakharov; Megan L Peach; Markus Sitzmann; Igor V Filippov; Heather J McCartney; Layton H Smith; Angelo Pugliese; Marc C Nicklaus
Journal:  Future Med Chem       Date:  2012-10       Impact factor: 3.808

10.  MetStabOn-Online Platform for Metabolic Stability Predictions.

Authors:  Sabina Podlewska; Rafał Kafel
Journal:  Int J Mol Sci       Date:  2018-03-30       Impact factor: 5.923

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