| Literature DB >> 17597520 |
Rosario Calderón1, Rosa Lodeiro, Tito A Varela, José Fariña, Beatriz Ambrosio, Evelyne Guitard, Antonio González-Martín, Jean M Dugoujon.
Abstract
BACKGROUND: The current genetic structure of Iberian populations has presumably been affected by the complex orography of its territory, the different people and civilizations that settled there, its ancient and complex history, the diverse and persistent sociocultural patterns in its different regions, and also by the effects of the Iberian Peninsula representing a refugium area after the last glacial maximum. This paper presents the first data on GM and KM immunoglobulin allotypes in the Galician population and, thus, provides further insights into the extent of genetic diversity in populations settled in the geographic extremes of the Cantabrian region of northern Spain. Furthermore, the genetic relationships of Galicians with other European populations have been investigated.Entities:
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Year: 2007 PMID: 17597520 PMCID: PMC1934380 DOI: 10.1186/1471-2156-8-37
Source DB: PubMed Journal: BMC Genet ISSN: 1471-2156 Impact factor: 2.797
Figure 1Map of Iberian Peninsula showing the location of the study Galician region (grey) and the locations of sampling sites in mainland Spain, where population data for GM and KM immunoglobulin allotypes are available. The site numbers correspond to those of Table 2.
GM and KM phenotype and allotype frequencies in the Galician population.
| 3 23 5* | 148 | 153.01 | 0.1995 | 0.0151 | |
| 3 23' 5* | 15 | 11.71 | 0.0751 | 0.0100 | |
| 1,17 23' 21,28 | 16 | 14.20 | 0.1811 | 0.0181 | |
| 1,2,17 23' 21,28 | 10 | 12.70 | 0.4982 | 0.0217 | |
| 1,3,17 23 5*,21,28 | 72 | 70.95 | 0.0448 | 0.0078 | |
| 1,3,17 23' 5*,21,28 | 27 | 25.79 | 0.0014 | 0.0014 | |
| 1,2,3,17 23 5*,21,28 | 30 | 26.69 | |||
| 1,2,3,17 23' 5*,21,28 | 7 | 9.70 | Gene Diversity (h) | 0.6729 | 0.0184 |
| 1,3,17 23 5* | 19 | 15.94 | |||
| 1,3,17 23' 5* | 3 | 5.80 | |||
| 1,17 23' 5*;21,28 | 3 | 6.38 | |||
| 1,3,17 23 5*,15,16 | 1 | 0.50 | |||
| 1,2,17 23' 5*;21,28 | 5 | 2.40 | |||
| 1,17 23' 5* | 1 | 0.72 | |||
| Other phenotype combinations | 0 | 0.50 | |||
| Sample size | 357 | ||||
| χ2 = 6.85 | |||||
| 1 | 73 | 73.00 | 0.1081 | 0.0120 | |
| -1 | 284 | 284.00 | 0.8919 | 0.0120 | |
| Sample size | 357 | ||||
5* = 5,10,11,13,14 allotypes
n.s. not significant
S.E. Standard Error
Figure 2Multidimensional Scaling Analysis (MDS) based on the variation of seven GM haplotypes and using Reynolds's Fdistances among nine Spanish populations. All the samples were typed for GM2 (23) allotype, what it has allowed considering GM*3 23' 5* and GM*3 23 5* haplotypes separately. The study population is shown in italic.
Figure 3Principal Component and Hierarchical Cluster analyses based on the geographical variations of six GM haplotypes among 36 European populations. All Iberian samples are integrated in clusters C1 and C3. Black circles are proportional to the number of populations of each cluster. GM haplotypes have been written in a short hand designation.
The group of Iberian and other European populations selected for genetic structure analysis based on GM haplotype geographical variations.
| 1 | |||
| 2 | Montes de Pas (Spain) | MPAS | 20* |
| 3 | Vizcaya Basques (Spain) | VIZC | 18 |
| 4 | Álava Basques (Spain) | ALAV | 18 |
| 5 | Guipúzcoa Basques (Spain) | GUIP | 18 |
| 6 | Navarra Basques (Spain) | NAVA | 19 |
| 7 | Pyrenean Aran Valley (Spain) | ARAN | 42 |
| 8 | Pyrenean Pallars Sobirá (Spain) | PALL | 25 |
| 9 | Valence (Spain) | VALC | 43 |
| 10 | Portugal | PORT | 21 |
| 11 | Macaye Basques (France) | MACY | 44 |
| 12 | St. Jean P.P. Basques (France) | SJPP | 44 |
| 13 | Mauleon Basques (France) | MAUL | 44 |
| 14 | France | FRAN | 45 |
| 15 | England | ENGL | 46 |
| 16 | Scotland | SCOT | 21 |
| 17 | Ireland | IRLN | 46 |
| 18 | Germany | GERM | 21 |
| 19 | Netherlands | NETH | 47 |
| 20 | Austria | AUST | 47 |
| 21 | Hungary | HUNG | 21 |
| 22 | Poland | POLN | 21 |
| 23 | Czechoslovakia | CZEC | 21 |
| 24 | Denmark | DENM | 46 |
| 25 | Norway | NORW | 21 |
| 26 | Iceland | ICEL | 21 |
| 27 | Italy | ITAL1 | 21, 48 |
| 28 | Pavia (Italy) | ITAL2 | 23 |
| 29 | Sicily (Italy) | SICL | 49, 21 |
| 30 | Sardinia (Italy) | SARD1 | 50, 21 |
| 31 | Sardinia (Italy) | SARD2 | 50 |
| 32 | Corsica | CORS | 45 |
| 33 | Yugoslavia | YUGS | 21 |
| 34 | Croatia | CROT1 | 44 |
| 35 | Pag Island (Croatia) | CROT2 | 22 |
| 36 | Greece | GREC | 21 |
*for details see Reference Section
Fixation indices Fand Fof population genetic structure analysis based on GM immunoglobulin haplotypes.
| 1 | Spain (9)a | 0.0031ns (0.0121***)b | |
| 1 | Iberian Peninsula (10) | 0.0041* | |
| 1 | Europe (36) | 0.0134*** | |
| 2 | Basques from Spain (4) + non-Basques from Spain (5) | 0.0017ns (0.0052)b | |
| 3 | (GALC+VALC)c + (GUIP+MPAS)c + other Spanish populations (5) | 0.0105** (0.0173**)b | |
| 2 | Iberian Peninsula (10) + other European populations (26) | 0.0081** | |
a = number of populations by group
b = values of Fand Fwith GM* 3 23' 5* and GM* 3 23 5* haplotypes separately
c = acronyms given to populations shown in Table 2
n.s. not significant, *P < 0.05 **P < 0.01, ***P < 0.001