| Literature DB >> 17586550 |
Clément Rezvoy1, Delphine Charif, Laurent Guéguen, Gabriel A B Marais.
Abstract
UNLABELLED: Comparing genetic and physical maps (the so-called Marey map approach) is still the most widely used approach to estimate genome-wide recombination rates. Remarkably, there is no available bioinformatics tool specifically devoted to Marey map approach. Here, we developed such a tool called MareyMap based on GNU R and Tcl/Tk. MareyMap offers a user-friendly graphical interface and includes useful features, such as data cleaning process, sophisticated interpolation methods to estimate local rates, possibility of complex queries, various range of import-export files. Moreover, MareyMap comes with ready-to-use maps for human, Drosophila, Caenorhabditis elegans and Arabidopsis. MareyMap has been made so that it can be easily upgraded with new data and interpolation methods. AVAILABILITY: http://pbil.univ-lyon1.fr/software/mareymap/.Entities:
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Year: 2007 PMID： 17586550 DOI： 10.1093/bioinformatics/btm315
Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937