Literature DB >> 17579561

Membrane protein structure: prediction versus reality.

Arne Elofsson1, Gunnar von Heijne.   

Abstract

Since high-resolution structural data are still scarce, different kinds of theoretical structure prediction algorithms are of major importance in membrane protein biochemistry. But how well do the current prediction methods perform? Which structural features can be predicted and which cannot? And what can we expect in the next few years?

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Year:  2007        PMID: 17579561     DOI: 10.1146/annurev.biochem.76.052705.163539

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  94 in total

1.  Retrieving backbone string neighbors provides insights into structural modeling of membrane proteins.

Authors:  Jiang-Ming Sun; Tong-Hua Li; Pei-Sheng Cong; Sheng-Nan Tang; Wen-Wei Xiong
Journal:  Mol Cell Proteomics       Date:  2012-03-13       Impact factor: 5.911

2.  Discrimination between alternate membrane protein topologies in living cells using GFP/YFP tagging and pH exchange.

Authors:  Beatriz Domingo; María Gasset; Mario Durán-Prado; Justo P Castaño; Antonio Serrano; Thierry Fischer; Juan Llopis
Journal:  Cell Mol Life Sci       Date:  2010-05-08       Impact factor: 9.261

3.  Internal duplications in α-helical membrane protein topologies are common but the nonduplicated forms are rare.

Authors:  Aron Hennerdal; Jenny Falk; Erik Lindahl; Arne Elofsson
Journal:  Protein Sci       Date:  2010-12       Impact factor: 6.725

4.  Protein folding: are we there yet?

Authors:  A Clay Clark
Journal:  Arch Biochem Biophys       Date:  2008-01-01       Impact factor: 4.013

5.  Estimating the length of transmembrane helices using Z-coordinate predictions.

Authors:  Costas Papaloukas; Erik Granseth; Håkan Viklund; Arne Elofsson
Journal:  Protein Sci       Date:  2007-12-20       Impact factor: 6.725

Review 6.  Vertebrate membrane proteins: structure, function, and insights from biophysical approaches.

Authors:  Daniel J Müller; Nan Wu; Krzysztof Palczewski
Journal:  Pharmacol Rev       Date:  2008-03-05       Impact factor: 25.468

Review 7.  Lipid-protein interactions drive membrane protein topogenesis in accordance with the positive inside rule.

Authors:  Mikhail Bogdanov; Jun Xie; William Dowhan
Journal:  J Biol Chem       Date:  2008-12-12       Impact factor: 5.157

8.  Complete atomistic model of a bacterial cytoplasm for integrating physics, biochemistry, and systems biology.

Authors:  Michael Feig; Ryuhei Harada; Takaharu Mori; Isseki Yu; Koichi Takahashi; Yuji Sugita
Journal:  J Mol Graph Model       Date:  2015-02-28       Impact factor: 2.518

9.  Membrane protein native state discrimination by implicit membrane models.

Authors:  Olga Yuzlenko; Themis Lazaridis
Journal:  J Comput Chem       Date:  2012-12-07       Impact factor: 3.376

10.  Model-guided mutagenesis drives functional studies of human NHA2, implicated in hypertension.

Authors:  Maya Schushan; Minghui Xiang; Pavel Bogomiakov; Etana Padan; Rajini Rao; Nir Ben-Tal
Journal:  J Mol Biol       Date:  2010-01-04       Impact factor: 5.469

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