Literature DB >> 17567743

An artificially evolved albumin binding module facilitates chemical shift epitope mapping of GA domain interactions with phylogenetically diverse albumins.

Yanan He1, Yihong Chen, David A Rozak, Philip N Bryan, John Orban.   

Abstract

Protein G-related albumin-binding (GA) modules occur on the surface of numerous Gram-positive bacterial pathogens and their presence may promote bacterial growth and virulence in mammalian hosts. We recently used phage display selection to evolve a GA domain, PSD-1 (phage selected domain-1), which tightly bound phylogenetically diverse albumins. With respect to PSD-1's broad albumin binding specificity, it remained unclear how the evolved binding epitope compared to those of naturally occurring GA domains and whether PSD-1's binding mode was the same for different albumins. We investigate these questions here using chemical shift perturbation measurements of PSD-1 with rabbit serum albumin (RSA) and human serum albumin (HSA) and put the results in the context of previous work on structure and dynamics of GA domains. Combined, these data provide insights into the requirements for broad binding specificity in GA-albumin interactions. Moreover, we note that using the phage-optimized PSD-1 protein significantly diminishes the effects of exchange broadening at the binding interface between GA modules and albumin, presumably through stabilization of a ligand-bound conformation. The employment of artificially evolved domains may be generally useful in NMR structural studies of other protein-protein complexes.

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Year:  2007        PMID: 17567743      PMCID: PMC2206689          DOI: 10.1110/ps.072799507

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  12 in total

1.  Engineering subtilisin into a fluoride-triggered processing protease useful for one-step protein purification.

Authors:  Biao Ruan; Kathryn E Fisher; Patrick A Alexander; Viktoriya Doroshko; Philip N Bryan
Journal:  Biochemistry       Date:  2004-11-23       Impact factor: 3.162

2.  Structure, dynamics, and stability variation in bacterial albumin binding modules: implications for species specificity.

Authors:  Yanan He; David A Rozak; Nese Sari; Yihong Chen; Philip Bryan; John Orban
Journal:  Biochemistry       Date:  2006-08-22       Impact factor: 3.162

3.  Hydrogen-deuterium exchange in free and prodomain-complexed subtilisin.

Authors:  Nese Sari; Biao Ruan; Kathryn E Fisher; Patrick A Alexander; John Orban; Philip N Bryan
Journal:  Biochemistry       Date:  2007-01-23       Impact factor: 3.162

4.  Using offset recombinant polymerase chain reaction to identify functional determinants in a common family of bacterial albumin binding domains.

Authors:  David A Rozak; Patrick A Alexander; Yanan He; Yihong Chen; John Orban; Philip N Bryan
Journal:  Biochemistry       Date:  2006-03-14       Impact factor: 3.162

5.  Structure, specificity, and mode of interaction for bacterial albumin-binding modules.

Authors:  Maria U Johansson; Inga-Maria Frick; Hanna Nilsson; Per J Kraulis; Sophia Hober; Per Jonasson; Martin Linhult; Per-Ake Nygren; Mathias Uhlén; Lars Björck; Torbjörn Drakenberg; Sture Forsén; Mats Wikström
Journal:  J Biol Chem       Date:  2001-12-18       Impact factor: 5.157

6.  Protein PAB, an albumin-binding bacterial surface protein promoting growth and virulence.

Authors:  M de Château; E Holst; L Björck
Journal:  J Biol Chem       Date:  1996-10-25       Impact factor: 5.157

7.  Solution structure of the albumin-binding GA module: a versatile bacterial protein domain.

Authors:  M U Johansson; M de Château; M Wikström; S Forsén; T Drakenberg; L Björck
Journal:  J Mol Biol       Date:  1997-03-14       Impact factor: 5.469

8.  Differences in backbone dynamics of two homologous bacterial albumin-binding modules: implications for binding specificity and bacterial adaptation.

Authors:  Maria U Johansson; Hanna Nilsson; Johan Evenäs; Sture Forsén; Torbjörn Drakenberg; Lars Björck; Mats Wikström
Journal:  J Mol Biol       Date:  2002-03-08       Impact factor: 5.469

9.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

10.  Crystal structure and biological implications of a bacterial albumin binding module in complex with human serum albumin.

Authors:  Sara Lejon; Inga-Maria Frick; Lars Björck; Mats Wikström; Stefan Svensson
Journal:  J Biol Chem       Date:  2004-07-21       Impact factor: 5.157

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  5 in total

1.  A minimal sequence code for switching protein structure and function.

Authors:  Patrick A Alexander; Yanan He; Yihong Chen; John Orban; Philip N Bryan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-18       Impact factor: 11.205

2.  Identification of the Docking Site for CD3 on the T Cell Receptor β Chain by Solution NMR.

Authors:  Yanan He; Sneha Rangarajan; Melissa Kerzic; Ming Luo; Yihong Chen; Qian Wang; Yiyuan Yin; Creg J Workman; Kate M Vignali; Dario A A Vignali; Roy A Mariuzza; John Orban
Journal:  J Biol Chem       Date:  2015-06-24       Impact factor: 5.157

3.  Mutational tipping points for switching protein folds and functions.

Authors:  Yanan He; Yihong Chen; Patrick A Alexander; Philip N Bryan; John Orban
Journal:  Structure       Date:  2012-02-08       Impact factor: 5.006

Review 4.  The albumin-binding domain as a scaffold for protein engineering.

Authors:  Johan Nilvebrant; Sophia Hober
Journal:  Comput Struct Biotechnol J       Date:  2013-09-01       Impact factor: 7.271

5.  Engineering of bispecific affinity proteins with high affinity for ERBB2 and adaptable binding to albumin.

Authors:  Johan Nilvebrant; Mikael Åstrand; Maria Georgieva-Kotseva; Mattias Björnmalm; John Löfblom; Sophia Hober
Journal:  PLoS One       Date:  2014-08-04       Impact factor: 3.240

  5 in total

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