Literature DB >> 17564727

Interaction between the ribosomal subunits: 16S rRNA suppressors of the lethal DeltaA1916 mutation in the 23S rRNA of Escherichia coli.

Michael O'connor1.   

Abstract

A1916 in 23S rRNA is located in one of the major intersubunit bridges of the 70S ribosome. Deletion of A1916 disrupts the intersubunit bridge B2a, promotes misreading of the genetic code and is lethal. In a genetic selection for suppressor mutations, two base substitutions in 16S rRNA were recovered that restored viability and also allowed expression of DeltaA1916-associated capreomycin resistance. These mutations were G1048A in helix 34 and U1471C in helix 44. Restoration of function is incomplete, however, and the double mutants are slow-growing, defective in subunit association and support high levels of translational errors. In contrast, none of these parameters is affected by the single 16S suppressor mutations. U1471C likely affects another intersubunit contact, bridge B6, suggesting that interactions between different bridges and cross-talk between subunits contributes to ribosomal function.

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Year:  2007        PMID: 17564727     DOI: 10.1007/s00438-007-0252-y

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  53 in total

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2.  Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity.

Authors:  Naomi Hirabayashi; Neuza Satomi Sato; Tsutomu Suzuki
Journal:  J Biol Chem       Date:  2006-04-18       Impact factor: 5.157

3.  Structure of the Escherichia coli ribosomal termination complex with release factor 2.

Authors:  Bruno P Klaholz; Tillmann Pape; Andrey V Zavialov; Alexander G Myasnikov; Elena V Orlova; Bente Vestergaard; Måns Ehrenberg; Marin van Heel
Journal:  Nature       Date:  2003-01-02       Impact factor: 49.962

4.  Resistance to viomycin conferred by RNA of either ribosomal subunit.

Authors:  T Yamada; Y Mizugichi; K H Nierhaus; H G Wittmann
Journal:  Nature       Date:  1978-10-05       Impact factor: 49.962

5.  Mutations in the intersubunit bridge regions of 23 S rRNA.

Authors:  Aivar Liiv; Michael O'Connor
Journal:  J Biol Chem       Date:  2006-08-04       Impact factor: 5.157

6.  Deletion of a conserved, central ribosomal intersubunit RNA bridge.

Authors:  Iraj K Ali; Laura Lancaster; Jason Feinberg; Simpson Joseph; Harry F Noller
Journal:  Mol Cell       Date:  2006-09-15       Impact factor: 17.970

7.  Viomycin favours the formation of 70S ribosome couples.

Authors:  T Yamada; K H Bierhaus
Journal:  Mol Gen Genet       Date:  1978-05-31

8.  UGA and non-triplet suppressor reading of the genetic code.

Authors:  J F Atkins; S Ryce
Journal:  Nature       Date:  1974-06-07       Impact factor: 49.962

9.  Study of the structural dynamics of the E coli 70S ribosome using real-space refinement.

Authors:  Haixiao Gao; Jayati Sengupta; Mikel Valle; Andrei Korostelev; Narayanan Eswar; Scott M Stagg; Patrick Van Roey; Rajendra K Agrawal; Stephen C Harvey; Andrej Sali; Michael S Chapman; Joachim Frank
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

10.  Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon.

Authors:  Sabine Petry; Ditlev E Brodersen; Frank V Murphy; Christine M Dunham; Maria Selmer; Michael J Tarry; Ann C Kelley; V Ramakrishnan
Journal:  Cell       Date:  2005-12-29       Impact factor: 41.582

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  7 in total

1.  Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica.

Authors:  Michael O'Connor; Steven T Gregory
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Review 2.  Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications.

Authors:  Christine S Chow; Tek N Lamichhane; Santosh K Mahto
Journal:  ACS Chem Biol       Date:  2007-09-21       Impact factor: 5.100

3.  Helix 69 in 23S rRNA modulates decoding by wild type and suppressor tRNAs.

Authors:  Michael O'Connor
Journal:  Mol Genet Genomics       Date:  2009-07-15       Impact factor: 3.291

4.  Mutations in conserved helix 69 of 23S rRNA of Thermus thermophilus that affect capreomycin resistance but not posttranscriptional modifications.

Authors:  Tanakarn Monshupanee; Steven T Gregory; Stephen Douthwaite; Wipa Chungjatupornchai; Albert E Dahlberg
Journal:  J Bacteriol       Date:  2008-09-19       Impact factor: 3.490

5.  YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA.

Authors:  Elzbieta Purta; Katarzyna H Kaminska; Joanna M Kasprzak; Janusz M Bujnicki; Stephen Douthwaite
Journal:  RNA       Date:  2008-08-28       Impact factor: 4.942

6.  pH-dependent structural changes of helix 69 from Escherichia coli 23S ribosomal RNA.

Authors:  Sanjaya C Abeysirigunawardena; Christine S Chow
Journal:  RNA       Date:  2008-02-11       Impact factor: 4.942

7.  Pseudomonas aeruginosa cleaves the decoding center of Caenorhabditis elegans ribosomes.

Authors:  Alejandro Vasquez-Rifo; Emiliano P Ricci; Victor Ambros
Journal:  PLoS Biol       Date:  2020-12-01       Impact factor: 8.029

  7 in total

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