Literature DB >> 17557861

Biophysical controls on community succession in stream biofilms.

Katharina Besemer1, Gabriel Singer, Romana Limberger, Ann-Kathrin Chlup, Gerald Hochedlinger, Iris Hödl, Christian Baranyi, Tom J Battin.   

Abstract

Biofilm formation is controlled by an array of coupled physical, chemical, and biotic processes. Despite the ecological relevance of microbial biofilms, their community formation and succession remain poorly understood. We investigated the effect of flow velocity, as the major physical force in stream ecosystems, on biofilm community succession (as continuous shifts in community composition) in microcosms under laminar, intermediate, and turbulent flow. Flow clearly shaped the development of biofilm architecture and community composition, as revealed by microscopic investigation, denaturing gradient gel electrophoresis (DGGE) analysis, and sequencing. While biofilm growth patterns were undirected under laminar flow, they were clearly directed into ridges and conspicuous streamers under turbulent flow. A total of 51 biofilm DGGE bands were detected; the average number ranged from 13 to 16. Successional trajectories diverged from an initial community that was common in all flow treatments and increasingly converged as biofilms matured. We suggest that this developmental pattern was primarily driven by algae, which, as "ecosystem engineers," modulate their microenvironment to create similar architectures and flow conditions in all treatments and thereby reduce the physical effect of flow on biofilms. Our results thus suggest a shift from a predominantly physical control to coupled biophysical controls on bacterial community succession in stream biofilms.

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Year:  2007        PMID: 17557861      PMCID: PMC1951047          DOI: 10.1128/AEM.00588-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  34 in total

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Authors:  F O Glöckner; E Zaichikov; N Belkova; L Denissova; J Pernthaler; A Pernthaler; R Amann
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2.  Contributions of microbial biofilms to ecosystem processes in stream mesocosms.

Authors:  Tom J Battin; Louis A Kaplan; J Denis Newbold; Claude M E Hansen
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

3.  GenBank: update.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  Diversity and seasonal variability of beta-Proteobacteria in biofilms of polluted rivers: analysis by temperature gradient gel electrophoresis and cloning.

Authors:  I H M Brümmer; A Felske; I Wagner-Döbler
Journal:  Appl Environ Microbiol       Date:  2003-08       Impact factor: 4.792

Review 5.  Biofilms as complex differentiated communities.

Authors:  P Stoodley; K Sauer; D G Davies; J W Costerton
Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500

6.  Bacterial community succession in natural river biofilm assemblages.

Authors:  Emilie Lyautey; Colin R Jackson; Jérôme Cayrou; Jean-Luc Rols; Frédéric Garabétian
Journal:  Microb Ecol       Date:  2005-12-15       Impact factor: 4.552

7.  Bacterial activity and community composition in stream water and biofilm from an urban river determined by fluorescent in situ hybridization and DGGE analysis.

Authors:  Ruben Araya; Katsuji Tani; Tatsuya Takagi; Nobuyasu Yamaguchi; Masao Nasu
Journal:  FEMS Microbiol Ecol       Date:  2003-02-01       Impact factor: 4.194

8.  Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov.

Authors:  J Zhou; M R Fries; J C Chee-Sanford; J M Tiedje
Journal:  Int J Syst Bacteriol       Date:  1995-07

9.  Taxonomic position of aromatic-degrading denitrifying pseudomonad strains K 172 and KB 740 and their description as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria.

Authors:  H J Anders; A Kaetzke; P Kämpfer; W Ludwig; G Fuchs
Journal:  Int J Syst Bacteriol       Date:  1995-04

10.  At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.

Authors:  Kevin E Ashelford; Nadia A Chuzhanova; John C Fry; Antonia J Jones; Andrew J Weightman
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

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  43 in total

1.  Seasonal and successional influences on bacterial community composition exceed that of protozoan grazing in river biofilms.

Authors:  Jennifer K Wey; Klaus Jürgens; Markus Weitere
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2.  Mass transfer enhancement in moving biofilm structures.

Authors:  Danial Taherzadeh; Cristian Picioreanu; Harald Horn
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

3.  Bacterial community composition of stream biofilms in spatially variable-flow environments.

Authors:  Katharina Besemer; Gabriel Singer; Iris Hödl; Tom J Battin
Journal:  Appl Environ Microbiol       Date:  2009-09-18       Impact factor: 4.792

4.  In situ spatio-temporal changes in pollution-induced community tolerance to zinc in autotrophic and heterotrophic biofilm communities.

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5.  Secondary flow as a mechanism for the formation of biofilm streamers.

Authors:  Roberto Rusconi; Sigolene Lecuyer; Nicolas Autrusson; Laura Guglielmini; Howard A Stone
Journal:  Biophys J       Date:  2011-03-16       Impact factor: 4.033

Review 6.  The ecology and biogeochemistry of stream biofilms.

Authors:  Tom J Battin; Katharina Besemer; Mia M Bengtsson; Anna M Romani; Aaron I Packmann
Journal:  Nat Rev Microbiol       Date:  2016-04       Impact factor: 60.633

7.  Patterns of bacterial biodiversity in the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica.

Authors:  David J Van Horn; Caitlin R Wolf; Daniel R Colman; Xiaoben Jiang; Tyler J Kohler; Diane M McKnight; Lee F Stanish; Terrill Yazzie; Cristina D Takacs-Vesbach
Journal:  FEMS Microbiol Ecol       Date:  2016-08-05       Impact factor: 4.194

Review 8.  Mechanomicrobiology: how bacteria sense and respond to forces.

Authors:  Yves F Dufrêne; Alexandre Persat
Journal:  Nat Rev Microbiol       Date:  2020-01-20       Impact factor: 60.633

9.  A novel planar flow cell for studies of biofilm heterogeneity and flow-biofilm interactions.

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10.  Physical heterogeneity increases biofilm resource use and its molecular diversity in stream mesocosms.

Authors:  Gabriel Singer; Katharina Besemer; Philippe Schmitt-Kopplin; Iris Hödl; Tom J Battin
Journal:  PLoS One       Date:  2010-04-01       Impact factor: 3.240

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