Literature DB >> 17557822

folA, a new member of the TyrR regulon in Escherichia coli K-12.

Ji Yang1, Yoshito Ogawa, Helen Camakaris, Tomohiro Shimada, Akira Ishihama, A J Pittard.   

Abstract

The folA gene was identified as a new member of the TyrR regulon by genomic SELEX. Binding of TyrR to two sites in folA activated its transcription. Mutations in the N-terminal or central domain of TyrR, the alpha subunit of RNA polymerase, or integration host factor all abolished activation of the folA promoter.

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Year:  2007        PMID： 17557822      PMCID： PMC1952039          DOI： 10.1128/JB.00482-07

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Identification of the binding sites of regulatory proteins in bacterial genomes.

Authors:  Hao Li; Virgil Rhodius; Carol Gross; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-14       Impact factor: 11.205

2.  Mutations affecting translational coupling between the rep genes of an IncB miniplasmid.

Authors:  J Praszkier; I W Wilson; A J Pittard
Journal:  J Bacteriol       Date:  1992-04       Impact factor: 3.490

3.  Mode of action of the TyrR protein: repression and activation of the tyrP promoter of Escherichia coli.

Authors:  Ji Yang; Jung Shan Hwang; Helen Camakaris; Windy Irawaty; Akira Ishihama; James Pittard
Journal:  Mol Microbiol       Date:  2004-04       Impact factor: 3.501

4.  Systematic search for the Cra-binding promoters using genomic SELEX system.

Authors:  Tomohiro Shimada; Nobuyuki Fujita; Michihisa Maeda; Akira Ishihama
Journal:  Genes Cells       Date:  2005-09       Impact factor: 1.891

Review 5.  The TyrR regulon.

Authors:  James Pittard; Helen Camakaris; Ji Yang
Journal:  Mol Microbiol       Date:  2005-01       Impact factor: 3.501

6.  Identification of the promoter, operator, and 5' and 3' ends of the mRNA of the Escherichia coli K-12 gene aroG.

Authors:  N Baseggio; W D Davies; B E Davidson
Journal:  J Bacteriol       Date:  1990-05       Impact factor: 3.490

7.  Integration host factor and cyclic AMP receptor protein are required for TyrR-mediated activation of tpl in Citrobacter freundii.

Authors:  Q Bai; R L Somerville
Journal:  J Bacteriol       Date:  1998-12       Impact factor: 3.490

8.  Ligand-induced self-association of the Escherichia coli regulatory protein TyrR.

Authors:  T J Wilson; P Maroudas; G J Howlett; B E Davidson
Journal:  J Mol Biol       Date:  1994-05-06       Impact factor: 5.469

9.  Amplification and modification of dihydrofolate reductase in Escherichia coli. Nucleotide sequence of fol genes from mutationally altered plasmids.

Authors:  D R Smith; J I Rood; P I Bird; M K Sneddon; J M Calvo; J F Morrison
Journal:  J Biol Chem       Date:  1982-08-10       Impact factor: 5.157

10.  A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome.

Authors:  K Robison; A M McGuire; G M Church
Journal:  J Mol Biol       Date:  1998-11-27       Impact factor: 5.469
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  14 in total

1.  Altered oligomerization properties of N316 mutants of Escherichia coli TyrR.

Authors:  Takashi Koyanagi; Takane Katayama; Hideyuki Suzuki; Hidehiko Kumagai
Journal:  J Bacteriol       Date:  2008-10-17       Impact factor: 3.490

2.  Identification of the set of genes, including nonannotated morA, under the direct control of ModE in Escherichia coli.

Authors:  Tatsuaki Kurata; Akira Katayama; Masakazu Hiramatsu; Yuya Kiguchi; Masamitsu Takeuchi; Tomoyuki Watanabe; Hiroshi Ogasawara; Akira Ishihama; Kaneyoshi Yamamoto
Journal:  J Bacteriol       Date:  2013-08-02       Impact factor: 3.490

3.  A novel nucleoid protein of Escherichia coli induced under anaerobiotic growth conditions.

Authors:  Jun Teramoto; Shige H Yoshimura; Kunio Takeyasu; Akira Ishihama
Journal:  Nucleic Acids Res       Date:  2010-02-15       Impact factor: 16.971

4.  Characterization of the TyrR Regulon in the Rhizobacterium Enterobacter ludwigii UW5 Reveals Overlap with the CpxR Envelope Stress Response.

Authors:  Thomas J D Coulson; René M Malenfant; Cheryl L Patten
Journal:  J Bacteriol       Date:  2020-12-07       Impact factor: 3.490

5.  Adaptation of Porphyromonas gingivalis to microaerophilic conditions involves increased consumption of formate and reduced utilization of lactate.

Authors:  Janina P Lewis; Divya Iyer; Cecilia Anaya-Bergman
Journal:  Microbiology (Reading)       Date:  2009-08-14       Impact factor: 2.777

6.  Discovery and Characterization of the Antimetabolite Action of Thioacetamide-Linked 1,2,3-Triazoles as Disruptors of Cysteine Biosynthesis in Gram-Negative Bacteria.

Authors:  Miranda J Wallace; Suresh Dharuman; Dinesh M Fernando; Stephanie M Reeve; Clifford T Gee; Jiangwei Yao; Elizabeth C Griffith; Gregory A Phelps; William C Wright; John M Elmore; Robin B Lee; Taosheng Chen; Richard E Lee
Journal:  ACS Infect Dis       Date:  2020-01-13       Impact factor: 5.084

7.  Aromatic amino acid-dependent expression of indole-3-pyruvate decarboxylase is regulated by TyrR in Enterobacter cloacae UW5.

Authors:  R Julie Ryu; Cheryl L Patten
Journal:  J Bacteriol       Date:  2008-08-29       Impact factor: 3.490

Review 8.  Prokaryotic genome regulation: a revolutionary paradigm.

Authors:  Akira Ishihama
Journal:  Proc Jpn Acad Ser B Phys Biol Sci       Date:  2012       Impact factor: 3.493

9.  The TyrR transcription factor regulates the divergent akr-ipdC operons of Enterobacter cloacae UW5.

Authors:  Thomas J D Coulson; Cheryl L Patten
Journal:  PLoS One       Date:  2015-03-26       Impact factor: 3.240

10.  Activation by TyrR in Escherichia coli K-12 by Interaction between TyrR and the α-Subunit of RNA Polymerase.

Authors:  Helen Camakaris; Ji Yang; Tadashi Fujii; James Pittard
Journal:  J Bacteriol       Date:  2021-09-08       Impact factor: 3.490
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