Literature DB >> 17554174

Reductive methylation to improve crystallization of the putative oxidoreductase Rv0765c from Mycobacterium tuberculosis.

Wilko Rauert1, Ali Nasser Eddine, Stefan H E Kaufmann, Manfred S Weiss, Robert Janowski.   

Abstract

Rv0765c from Mycobacterium tuberculosis was cloned and heterologously expressed in Escherichia coli. It was purified using affinity and size-exclusion chromatographic techniques and crystallized. The native protein crystallized in a hexagonal crystal form which diffracted to 7 A resolution. In an attempt to improve the quality of the Rv0765c crystals, the protein was modified by reductive methylation using dimethylaminoborane and formaldehyde. The modified protein crystallized under different conditions in a tetragonal crystal form, from which diffraction data could be collected to a resolution of 3.2 A. In both crystal forms of Rv0765c, the asymmetric unit contained two copies of the protein molecule.

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Year:  2007        PMID: 17554174      PMCID: PMC2335070          DOI: 10.1107/S1744309107022506

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

1.  Crystallization and improvement of crystal quality for x-ray diffraction of maltooligosyl trehalose synthase by reductive methylation of lysine residues.

Authors:  M Kobayashi; M Kubota; Y Matsuura
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

2.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

3.  Complete sequencing and characterization of 21,243 full-length human cDNAs.

Authors:  Toshio Ota; Yutaka Suzuki; Tetsuo Nishikawa; Tetsuji Otsuki; Tomoyasu Sugiyama; Ryotaro Irie; Ai Wakamatsu; Koji Hayashi; Hiroyuki Sato; Keiichi Nagai; Kouichi Kimura; Hiroshi Makita; Mitsuo Sekine; Masaya Obayashi; Tatsunari Nishi; Toshikazu Shibahara; Toshihiro Tanaka; Shizuko Ishii; Jun-ichi Yamamoto; Kaoru Saito; Yuri Kawai; Yuko Isono; Yoshitaka Nakamura; Kenji Nagahari; Katsuhiko Murakami; Tomohiro Yasuda; Takao Iwayanagi; Masako Wagatsuma; Akiko Shiratori; Hiroaki Sudo; Takehiko Hosoiri; Yoshiko Kaku; Hiroyo Kodaira; Hiroshi Kondo; Masanori Sugawara; Makiko Takahashi; Katsuhiro Kanda; Takahide Yokoi; Takako Furuya; Emiko Kikkawa; Yuhi Omura; Kumi Abe; Kumiko Kamihara; Naoko Katsuta; Kazuomi Sato; Machiko Tanikawa; Makoto Yamazaki; Ken Ninomiya; Tadashi Ishibashi; Hiromichi Yamashita; Katsuji Murakawa; Kiyoshi Fujimori; Hiroyuki Tanai; Manabu Kimata; Motoji Watanabe; Susumu Hiraoka; Yoshiyuki Chiba; Shinichi Ishida; Yukio Ono; Sumiyo Takiguchi; Susumu Watanabe; Makoto Yosida; Tomoko Hotuta; Junko Kusano; Keiichi Kanehori; Asako Takahashi-Fujii; Hiroto Hara; Tomo-o Tanase; Yoshiko Nomura; Sakae Togiya; Fukuyo Komai; Reiko Hara; Kazuha Takeuchi; Miho Arita; Nobuyuki Imose; Kaoru Musashino; Hisatsugu Yuuki; Atsushi Oshima; Naokazu Sasaki; Satoshi Aotsuka; Yoko Yoshikawa; Hiroshi Matsunawa; Tatsuo Ichihara; Namiko Shiohata; Sanae Sano; Shogo Moriya; Hiroko Momiyama; Noriko Satoh; Sachiko Takami; Yuko Terashima; Osamu Suzuki; Satoshi Nakagawa; Akihiro Senoh; Hiroshi Mizoguchi; Yoshihiro Goto; Fumio Shimizu; Hirokazu Wakebe; Haretsugu Hishigaki; Takeshi Watanabe; Akio Sugiyama; Makoto Takemoto; Bunsei Kawakami; Masaaki Yamazaki; Koji Watanabe; Ayako Kumagai; Shoko Itakura; Yasuhito Fukuzumi; Yoshifumi Fujimori; Megumi Komiyama; Hiroyuki Tashiro; Akira Tanigami; Tsutomu Fujiwara; Toshihide Ono; Katsue Yamada; Yuka Fujii; Kouichi Ozaki; Maasa Hirao; Yoshihiro Ohmori; Ayako Kawabata; Takeshi Hikiji; Naoko Kobatake; Hiromi Inagaki; Yasuko Ikema; Sachiko Okamoto; Rie Okitani; Takuma Kawakami; Saori Noguchi; Tomoko Itoh; Keiko Shigeta; Tadashi Senba; Kyoka Matsumura; Yoshie Nakajima; Takae Mizuno; Misato Morinaga; Masahide Sasaki; Takushi Togashi; Masaaki Oyama; Hiroko Hata; Manabu Watanabe; Takami Komatsu; Junko Mizushima-Sugano; Tadashi Satoh; Yuko Shirai; Yukiko Takahashi; Kiyomi Nakagawa; Koji Okumura; Takahiro Nagase; Nobuo Nomura; Hisashi Kikuchi; Yasuhiko Masuho; Riu Yamashita; Kenta Nakai; Tetsushi Yada; Yusuke Nakamura; Osamu Ohara; Takao Isogai; Sumio Sugano
Journal:  Nat Genet       Date:  2003-12-21       Impact factor: 38.330

4.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

5.  Tuberculosis.

Authors:  Phillip Onyebujoh; Graham A W Rook
Journal:  Nat Rev Microbiol       Date:  2004-12       Impact factor: 60.633

6.  Structure of beta-ketoacyl-[acyl carrier protein] reductase from Escherichia coli: negative cooperativity and its structural basis.

Authors:  A C Price; Y M Zhang; C O Rock; S W White
Journal:  Biochemistry       Date:  2001-10-30       Impact factor: 3.162

7.  A pivotal role for reductive methylation in the de novo crystallization of a ternary complex composed of Yersinia pestis virulence factors YopN, SycN and YscB.

Authors:  Florian D Schubot; David S Waugh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-10-20

8.  X-ray crystallographic analysis of pokeweed antiviral protein-II after reductive methylation of lysine residues.

Authors:  I V Kurinov; C Mao; J D Irvin; F M Uckun
Journal:  Biochem Biophys Res Commun       Date:  2000-08-28       Impact factor: 3.575

9.  The complete genome sequence of Mycobacterium bovis.

Authors:  Thierry Garnier; Karin Eiglmeier; Jean-Christophe Camus; Nadine Medina; Huma Mansoor; Melinda Pryor; Stephanie Duthoy; Sophie Grondin; Celine Lacroix; Christel Monsempe; Sylvie Simon; Barbara Harris; Rebecca Atkin; Jon Doggett; Rebecca Mayes; Lisa Keating; Paul R Wheeler; Julian Parkhill; Bart G Barrell; Stewart T Cole; Stephen V Gordon; R Glyn Hewinson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-03       Impact factor: 11.205

10.  Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv.

Authors:  Jean-Christophe Camus; Melinda J Pryor; Claudine Médigue; Stewart T Cole
Journal:  Microbiology       Date:  2002-10       Impact factor: 2.777

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  3 in total

1.  Crystallization of a pentapeptide-repeat protein by reductive cyclic pentylation of free amines with glutaraldehyde.

Authors:  Matthew W Vetting; Subray S Hegde; John S Blanchard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-04-18

2.  Improvement of the quality of lumazine synthase crystals by protein engineering.

Authors:  Lidia Rodríguez-Fernández; F Javier López-Jaramillo; Adelbert Bacher; Markus Fischer; Sevil Weinkauf
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-11

3.  Biochemical and structural characterization of alanine racemase from Bacillus anthracis (Ames).

Authors:  Rafael M Couñago; Milya Davlieva; Ulrich Strych; Ryan E Hill; Kurt L Krause
Journal:  BMC Struct Biol       Date:  2009-08-20
  3 in total

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