Literature DB >> 17545969

A reliable general purpose method for extracting genomic DNA from Dictyostelium cells.

Karen E Pilcher1, Petra Fey, Pascale Gaudet, Anthony S Kowal, Rex L Chisholm.   

Abstract

In this protocol, we present a standard method for extracting DNA from cells of the social amoeba Dictyostelium discoideum. While this procedure is similar to other phenol:chloroform-based purification methods, it is modified to account for the high level of carbohydrate and nucleases found in Dictyostelium cells. Genomic DNA can be isolated from wild-type and genetically modified cells using the described protocol, allowing molecular genetic analyses to be performed. Following cell lysis, nucleic acid extraction, and precipitation, the isolated DNA is suitable for digestion by restriction enzymes, amplification by PCR and Southern blotting. This procedure takes approximately 3 h to complete.

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Year:  2007        PMID: 17545969     DOI: 10.1038/nprot.2007.180

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  7 in total

1.  Genetic heterogeneity in wild isolates of cellular slime mold social groups.

Authors:  Santosh Sathe; Sonia Kaushik; Albert Lalremruata; Ramesh K Aggarwal; James C Cavender; Vidyanand Nanjundiah
Journal:  Microb Ecol       Date:  2010-02-24       Impact factor: 4.552

2.  SRCP1 Conveys Resistance to Polyglutamine Aggregation.

Authors:  Stephanie Santarriaga; Holly N Haver; Adam J Kanack; Alicia S Fikejs; Samantha L Sison; John M Egner; Jonathan R Bostrom; Emily R Seminary; R Blake Hill; Brian A Link; Allison D Ebert; K Matthew Scaglione
Journal:  Mol Cell       Date:  2018-07-19       Impact factor: 17.970

3.  Nucleocytoplasmic transfer of cyclin dependent kinase 5 and its binding to puromycin-sensitive aminopeptidase in Dictyostelium discoideum.

Authors:  Robert J Huber; Danton H O'Day
Journal:  Histochem Cell Biol       Date:  2011-07-16       Impact factor: 4.304

4.  Fluorescence detection of single-nucleotide polymorphisms with a single, self-complementary, triple-stem DNA probe.

Authors:  Yi Xiao; Kory J I Plakos; Xinhui Lou; Ryan J White; Jiangrong Qian; Kevin W Plaxco; H Tom Soh
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

5.  ACAP-A/B are ArfGAP homologs in dictyostelium involved in sporulation but not in chemotaxis.

Authors:  Pei-Wen Chen; Paul A Randazzo; Carole A Parent
Journal:  PLoS One       Date:  2010-01-07       Impact factor: 3.240

6.  A flavin-dependent halogenase catalyzes the chlorination step in the biosynthesis of Dictyostelium differentiation-inducing factor 1.

Authors:  Christopher S Neumann; Christopher T Walsh; Robert R Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

7.  Specific growth suppression of human cancer cells by targeted delivery of Dictyostelium mitochondrial ribosomal protein S4.

Authors:  Junji Chida; Hikaru Araki; Yasuo Maeda
Journal:  Cancer Cell Int       Date:  2014-06-20       Impact factor: 5.722

  7 in total

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