Literature DB >> 17531267

Crystal structures of a poplar thioredoxin peroxidase that exhibits the structure of glutathione peroxidases: insights into redox-driven conformational changes.

Cha San Koh1, Claude Didierjean, Nicolas Navrot, Santosh Panjikar, Guillermo Mulliert, Nicolas Rouhier, Jean-Pierre Jacquot, André Aubry, Omar Shawkataly, Catherine Corbier.   

Abstract

Glutathione peroxidases (GPXs) are a group of enzymes that regulate the levels of reactive oxygen species in cells and tissues, and protect them against oxidative damage. Contrary to most of their counterparts in animal cells, the higher plant GPX homologues identified so far possess cysteine instead of selenocysteine in their active site. Interestingly, the plant GPXs are not dependent on glutathione but rather on thioredoxin as their in vitro electron donor. We have determined the crystal structures of the reduced and oxidized form of Populus trichocarpaxdeltoides GPX5 (PtGPX5), using a selenomethionine derivative. PtGPX5 exhibits an overall structure similar to that of the known animal GPXs. PtGPX5 crystallized in the assumed physiological dimeric form, displaying a pseudo ten-stranded beta sheet core. Comparison of both redox structures indicates that a drastic conformational change is necessary to bring the two distant cysteine residues together to form an intramolecular disulfide bond. In addition, a computer model of a complex of PtGPX5 and its in vitro recycling partner thioredoxin h1 is proposed on the basis of the crystal packing of the oxidized form enzyme. A possible role of PtGPX5 as a heavy-metal sink is also discussed.

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Year:  2007        PMID: 17531267     DOI: 10.1016/j.jmb.2007.04.031

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  22 in total

1.  Structural and biochemical characterization of peroxiredoxin Qbeta from Xylella fastidiosa: catalytic mechanism and high reactivity.

Authors:  Bruno Brasil Horta; Marcos Antonio de Oliveira; Karen Fulan Discola; José Renato Rosa Cussiol; Luis Eduardo Soares Netto
Journal:  J Biol Chem       Date:  2010-03-24       Impact factor: 5.157

2.  Structural and biochemical characterization of mitochondrial citrate synthase 4 from Arabidopsis thaliana.

Authors:  Kazuya Nishio; Tsunehiro Mizushima
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-03-01       Impact factor: 1.056

Review 3.  Enzymatic Halogenation and Dehalogenation Reactions: Pervasive and Mechanistically Diverse.

Authors:  Vinayak Agarwal; Zachary D Miles; Jaclyn M Winter; Alessandra S Eustáquio; Abrahim A El Gamal; Bradley S Moore
Journal:  Chem Rev       Date:  2017-01-20       Impact factor: 60.622

4.  GPX3 from Arabidopsis thaliana: cloning, expression, purification, crystallization and preliminary X-ray analysis.

Authors:  Kun Li; Qingzhan Yang; Wei Wang; Xiaoliang Zhao; Zhiyong Lou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-10-17

5.  Structural basis for a distinct catalytic mechanism in Trypanosoma brucei tryparedoxin peroxidase.

Authors:  Johannes Melchers; Michael Diechtierow; Krisztina Fehér; Irmgard Sinning; Ivo Tews; R Luise Krauth-Siegel; Claudia Muhle-Goll
Journal:  J Biol Chem       Date:  2008-08-06       Impact factor: 5.157

Review 6.  The peroxiredoxin and glutathione peroxidase families in Chlamydomonas reinhardtii.

Authors:  Régine Dayer; Beat B Fischer; Rik I L Eggen; Stéphane D Lemaire
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

7.  Crystal structure of mammalian selenocysteine-dependent iodothyronine deiodinase suggests a peroxiredoxin-like catalytic mechanism.

Authors:  Ulrich Schweizer; Christine Schlicker; Doreen Braun; Josef Köhrle; Clemens Steegborn
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

8.  Efficient acclimation of the chloroplast antioxidant defence of Arabidopsis thaliana leaves in response to a 10- or 100-fold light increment and the possible involvement of retrograde signals.

Authors:  Marie-Luise Oelze; Marc Oliver Vogel; Khalid Alsharafa; Uwe Kahmann; Andrea Viehhauser; Veronica G Maurino; Karl-Josef Dietz
Journal:  J Exp Bot       Date:  2011-11-29       Impact factor: 6.992

9.  Structural and mechanistic insights into type II trypanosomatid tryparedoxin-dependent peroxidases.

Authors:  Magnus S Alphey; Janine König; Alan H Fairlamb
Journal:  Biochem J       Date:  2008-09-15       Impact factor: 3.857

Review 10.  The role of disordered ribosomal protein extensions in the early steps of eubacterial 50 S ribosomal subunit assembly.

Authors:  Youri Timsit; Zahir Acosta; Frédéric Allemand; Claude Chiaruttini; Mathias Springer
Journal:  Int J Mol Sci       Date:  2009-03-02       Impact factor: 6.208

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