Literature DB >> 17519970

Ecological genomics: understanding gene and genome function in the natural environment.

M C Ungerer1, L C Johnson, M A Herman.   

Abstract

The field of ecological genomics seeks to understand the genetic mechanisms underlying responses of organisms to their natural environments. This is being achieved through the application of functional genomic approaches to identify and characterize genes with ecological and evolutionary relevance. By its very nature, ecological genomics is an interdisciplinary field. In this review, we consider the significance of this new area of study from both an ecological and genomic perspective using examples from the recent literature. We submit that by considering more fully an ecological context, researchers may gain additional insights into the underlying genetic basis of ecologically relevant phenotypic variation. Likewise, genomic approaches are beginning to offer new insights into higher-level biological phenomena that previously occupied the realm of ecological investigation only. We discuss various approaches that are likely to be useful in ecological genomic studies and offer thoughts on where this field is headed in the future.

Mesh:

Year:  2007        PMID: 17519970     DOI: 10.1038/sj.hdy.6800992

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  32 in total

Review 1.  Molecular spandrels: tests of adaptation at the genetic level.

Authors:  Rowan D H Barrett; Hopi E Hoekstra
Journal:  Nat Rev Genet       Date:  2011-10-18       Impact factor: 53.242

Review 2.  Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana.

Authors:  Joy Bergelson; Fabrice Roux
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

3.  Next-generation sequencing propels environmental genomics to the front line of research.

Authors:  D Joly; D Faure
Journal:  Heredity (Edinb)       Date:  2015-05       Impact factor: 3.821

4.  Incorporating genomics into the toolkit of nematology.

Authors:  Adler R Dillman; Ali Mortazavi; Paul W Sternberg
Journal:  J Nematol       Date:  2012-06       Impact factor: 1.402

5.  nrDNA:mtDNA copy number ratios as a comparative metric for evolutionary and conservation genetics.

Authors:  William Paul Goodall-Copestake
Journal:  Heredity (Edinb)       Date:  2018-05-12       Impact factor: 3.821

6.  Hitchhiking mapping reveals a candidate genomic region for natural selection in three-spined stickleback chromosome VIII.

Authors:  Hannu S Mäkinen; Takahito Shikano; José Manuel Cano; Juha Merilä
Journal:  Genetics       Date:  2008-01       Impact factor: 4.562

7.  The porcelain crab transcriptome and PCAD, the porcelain crab microarray and sequence database.

Authors:  Abderrahmane Tagmount; Mei Wang; Erika Lindquist; Yoshihiro Tanaka; Kristen S Teranishi; Shinichi Sunagawa; Mike Wong; Jonathon H Stillman
Journal:  PLoS One       Date:  2010-02-19       Impact factor: 3.240

Review 8.  Integration of molecular functions at the ecosystemic level: breakthroughs and future goals of environmental genomics and post-genomics.

Authors:  Philippe Vandenkoornhuyse; Alexis Dufresne; Achim Quaiser; Gwenola Gouesbet; Françoise Binet; André-Jean Francez; Stéphane Mahé; Myriam Bormans; Yvan Lagadeuc; Ivan Couée
Journal:  Ecol Lett       Date:  2010-04-21       Impact factor: 9.492

9.  Lesion simulating disease1, enhanced disease susceptibility1, and phytoalexin deficient4 conditionally regulate cellular signaling homeostasis, photosynthesis, water use efficiency, and seed yield in Arabidopsis.

Authors:  Weronika Wituszynska; Ireneusz Slesak; Sandy Vanderauwera; Magdalena Szechynska-Hebda; Andrzej Kornas; Katrien Van Der Kelen; Per Mühlenbock; Barbara Karpinska; Sebastian Mackowski; Frank Van Breusegem; Stanislaw Karpinski
Journal:  Plant Physiol       Date:  2013-02-11       Impact factor: 8.340

10.  Ecological genomics of Boechera stricta: identification of a QTL controlling the allocation of methionine- vs branched-chain amino acid-derived glucosinolates and levels of insect herbivory.

Authors:  M E Schranz; A J Manzaneda; A J Windsor; M J Clauss; T Mitchell-Olds
Journal:  Heredity (Edinb)       Date:  2009-02-25       Impact factor: 3.821

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