Literature DB >> 17518496

ESEEM studies of peptide nitrogen hyperfine coupling in tyrosyl radicals and model peptides.

John McCracken1, Ilya R Vassiliev, En-Che Yang, Kevin Range, Bridgette A Barry.   

Abstract

Tyrosyl radicals are important in long-range electron transfer in several enzymes, but the protein environmental factors that control midpoint potential and electron transfer rate are not well understood. To develop a more detailed understanding of the effect of protein sequence, we have performed 14N and 15N electron spin echo envelope modulation (ESEEM) measurements on tyrosyl radical, generated either in polycrystalline tyrosinate or in its 15N-labeled isotopomer, by UV photolysis. 14N-ESEEM was also performed on tyrosyl radical generated in tyrosine-containing pentapeptide samples. Simulation of the 14N- and 15N-tyrosyl radical ESEEM measurements yielded no significant isotropic hyperfine splitting to the amine or amide nitrogen; the amplitude of the anisotropic, nitrogen hyperfine coupling (0.21 MHz) was consistent with a dipole-dipole distance of 3.0 A. Density functional theory was used to calculate the isotropic and anisotropic hyperfine couplings to the amino nitrogen in four different tyrosyl radical conformers. Comparison with the simulated data suggested that the lowest energy radical conformer, generated in tyrosine at pH 11, has a 76 degrees Calpha-Cbeta-C1'-C2' ring and a -73 degrees C-Calpha-Cbeta-C1' backbone dihedral angle. In addition, the magnitude, orientation, and asymmetry of the nuclear quadrupole coupling tensor were derived from analysis of the tyrosyl radical 14N-ESEEM. The simulations showed differences in the coupling and orientation of the nuclear quadrupole tensor, when the tyrosinate and pentapeptide samples were compared. These results suggest sequence- or conformation-induced changes in the ionic character of the NH bond in different tyrosine-containing peptides.

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Year:  2007        PMID: 17518496      PMCID: PMC2518650          DOI: 10.1021/jp071402x

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  20 in total

1.  Conformational and spectroscopic analysis of the tyrosyl radical dipeptide analogue in the gas phase and in aqueous solution by a density functional/continuum solvent model.

Authors:  Emma Langella; Roberto Improta; Vincenzo Barone
Journal:  J Am Chem Soc       Date:  2002-09-25       Impact factor: 15.419

2.  The partial charge of the nitrogen atom in peptide bonds.

Authors:  E J Milner-White
Journal:  Protein Sci       Date:  1997-11       Impact factor: 6.725

3.  Normal modes of redox-active tyrosine: conformation dependence and comparison to experiment.

Authors:  Kevin Range; Idelisa Ayala; Darrin York; Bridgette A Barry
Journal:  J Phys Chem B       Date:  2006-06-08       Impact factor: 2.991

4.  Tyrosine radicals are involved in the photosynthetic oxygen-evolving system.

Authors:  B A Barry; G T Babcock
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

5.  Redox-active tyrosine residues in pentapeptides.

Authors:  Ilya R Vassiliev; Adam R Offenbacher; Bridgette A Barry
Journal:  J Phys Chem B       Date:  2005-12-08       Impact factor: 2.991

6.  Tyrosine radicals in photosystem II and related model compounds. Characterization by isotopic labeling and EPR spectroscopy.

Authors:  B A Barry; M K el-Deeb; P O Sandusky; G T Babcock
Journal:  J Biol Chem       Date:  1990-11-25       Impact factor: 5.157

Review 7.  Tryptophan or tyrosine? On the nature of the amino acid radical formed following hydrogen peroxide treatment of cytochrome c oxidase.

Authors:  Dimitri A Svistunenko; Mike T Wilson; Chris E Cooper
Journal:  Biochim Biophys Acta       Date:  2004-04-12

8.  Proton-coupled electron transfer in a biomimetic peptide as a model of enzyme regulatory mechanisms.

Authors:  Robin Sibert; Mira Josowicz; Fernando Porcelli; Gianluigi Veglia; Kevin Range; Bridgette A Barry
Journal:  J Am Chem Soc       Date:  2007-03-16       Impact factor: 15.419

9.  Spectroscopic evidence for reaction of prostaglandin H synthase-1 tyrosyl radical with arachidonic acid.

Authors:  A Tsai; R J Kulmacz; G Palmer
Journal:  J Biol Chem       Date:  1995-05-05       Impact factor: 5.157

Review 10.  Manganese and tyrosyl radical function in photosynthetic oxygen evolution.

Authors:  C Tommos; C W Hoganson; M D Valentin; N Lydakis-Simantiris; P Dorlet; K Westphal; H A Chu; J McCracken; G T Babcock
Journal:  Curr Opin Chem Biol       Date:  1998-04       Impact factor: 8.822

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  7 in total

1.  Proton Coupled Electron Transfer and Redox Active Tyrosines: Structure and Function of the Tyrosyl Radicals in Ribonucleotide Reductase and Photosystem II.

Authors:  Bridgette A Barry; Jun Chen; James Keough; David Jenson; Adam Offenbacher; Cynthia Pagba
Journal:  J Phys Chem Lett       Date:  2012-02-08       Impact factor: 6.475

Review 2.  Proton-coupled electron transfer.

Authors:  My Hang V Huynh; Thomas J Meyer
Journal:  Chem Rev       Date:  2007-11       Impact factor: 60.622

Review 3.  Proton coupled electron transfer and redox active tyrosines in Photosystem II.

Authors:  Bridgette A Barry
Journal:  J Photochem Photobiol B       Date:  2011-03-17       Impact factor: 6.252

4.  Reduction of the [2Fe-2S] cluster accompanies formation of the intermediate 9-mercaptodethiobiotin in Escherichia coli biotin synthase.

Authors:  Andrew M Taylor; Stefan Stoll; R David Britt; Joseph T Jarrett
Journal:  Biochemistry       Date:  2011-08-25       Impact factor: 3.162

5.  Redox-linked conformational control of proton-coupled electron transfer: Y122 in the ribonucleotide reductase β2 subunit.

Authors:  Adam R Offenbacher; Lori A Burns; C David Sherrill; Bridgette A Barry
Journal:  J Phys Chem B       Date:  2013-07-03       Impact factor: 2.991

6.  Redox-linked structural changes in ribonucleotide reductase.

Authors:  A R Offenbacher; I R Vassiliev; M R Seyedsayamdost; J Stubbe; B A Barry
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

7.  A spectroscopic investigation of a tridentate Cu-complex mimicking the tyrosine-histidine cross-link of cytochrome C oxidase.

Authors:  Adam Offenbacher; Kimberly N White; Indranil Sen; Allen G Oliver; Joseph P Konopelski; Bridgette A Barry; Olöf Einarsdóttir
Journal:  J Phys Chem B       Date:  2009-05-21       Impact factor: 2.991

  7 in total

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