Literature DB >> 17517155

Small-world networks decrease the speed of Muller's ratchet.

Jaime Combadão1, Paulo R A Campos, Francisco Dionisio, Isabel Gordo.   

Abstract

Muller's ratchet is an evolutionary process that has been implicated in the extinction of asexual species, the evolution of non-recombining genomes, such as the mitochondria, the degeneration of the Y chromosome, and the evolution of sex and recombination. Here we study the speed of Muller's ratchet in a spatially structured population which is subdivided into many small populations (demes) connected by migration, and distributed on a graph. We studied different types of networks: regular networks (similar to the stepping-stone model), small-world networks and completely random graphs. We show that at the onset of the small-world network - which is characterized by high local connectivity among the demes but low average path length - the speed of the ratchet starts to decrease dramatically. This result is independent of the number of demes considered, but is more pronounced the larger the network and the stronger the deleterious effect of mutations. Furthermore, although the ratchet slows down with increasing migration between demes, the observed decrease in speed is smaller in the stepping-stone model than in small-world networks. As migration rate increases, the structured populations approach, but never reach, the result in the corresponding panmictic population with the same number of individuals. Since small-world networks have been shown to describe well the real contact networks among people, we discuss our results in the light of the evolution of microbes and disease epidemics.

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Mesh:

Year:  2007        PMID: 17517155     DOI: 10.1017/S0016672307008658

Source DB:  PubMed          Journal:  Genet Res        ISSN: 0016-6723            Impact factor:   1.588


  10 in total

1.  Loss of least-loaded class in asexual populations due to drift and epistasis.

Authors:  Kavita Jain
Journal:  Genetics       Date:  2008-08-09       Impact factor: 4.562

2.  Sex and deleterious mutations.

Authors:  Isabel Gordo; Paulo R A Campos
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

3.  The effects of recombination rate on the distribution and abundance of transposable elements.

Authors:  Elie S Dolgin; Brian Charlesworth
Journal:  Genetics       Date:  2008-04       Impact factor: 4.562

4.  Rate and effects of spontaneous mutations that affect fitness in mutator Escherichia coli.

Authors:  Sandra Trindade; Lilia Perfeito; Isabel Gordo
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

5.  Do clones degenerate over time? Explaining the genetic variability of asexuals through population genetic models.

Authors:  Karel Janko; Pavel Drozd; Jan Eisner
Journal:  Biol Direct       Date:  2011-03-03       Impact factor: 4.540

6.  Degenerative Expansion of a Young Supergene.

Authors:  Eckart Stolle; Rodrigo Pracana; Philip Howard; Carolina I Paris; Susan J Brown; Claudia Castillo-Carrillo; Stephen J Rossiter; Yannick Wurm
Journal:  Mol Biol Evol       Date:  2019-03-01       Impact factor: 16.240

7.  The Perfect Condition for the Rising of Superbugs: Person-to-Person Contact and Antibiotic Use Are the Key Factors Responsible for the Positive Correlation between Antibiotic Resistance Gene Diversity and Virulence Gene Diversity in Human Metagenomes.

Authors:  Célia P F Domingues; João S Rebelo; Joël Pothier; Francisca Monteiro; Teresa Nogueira; Francisco Dionisio
Journal:  Antibiotics (Basel)       Date:  2021-05-20

8.  Genetic diversity in the SIR model of pathogen evolution.

Authors:  Isabel Gordo; M Gabriela M Gomes; Daniel G Reis; Paulo R A Campos
Journal:  PLoS One       Date:  2009-03-16       Impact factor: 3.240

9.  On the potential for extinction by Muller's ratchet in Caenorhabditis elegans.

Authors:  Laurence Loewe; Asher D Cutter
Journal:  BMC Evol Biol       Date:  2008-04-30       Impact factor: 3.260

10.  Horizontal gene transfer can rescue prokaryotes from Muller's ratchet: benefit of DNA from dead cells and population subdivision.

Authors:  Nobuto Takeuchi; Kunihiko Kaneko; Eugene V Koonin
Journal:  G3 (Bethesda)       Date:  2014-02-19       Impact factor: 3.154

  10 in total

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