Literature DB >> 17512061

Rapid detection of human herpesvirus 8 DNA using loop-mediated isothermal amplification.

Tomoe Kuhara1, Tetsushi Yoshikawa, Masaru Ihira, Daisuke Watanabe, Yasuhiko Tamada, Harutaka Katano, Yoshizo Asano, Yoshinari Matsumoto.   

Abstract

The reliability of a loop-mediated isothermal amplification (LAMP) method for the detection of human herpesvirus 8 (HHV-8) DNA was evaluated. Although LAMP products were produced with the DNA sample extracted from BCP-1 cells, LAMP products were not produced with the DNAs from seven other human herpesviruses. The detection limit of the HHV-8 LAMP method was 100 copies of target sequence/tube. To determine whether the HHV-8 LAMP method could be used to quantify viral DNA, threshold times, which are defined as the time (in s) it takes to reach the threshold turbidity level (0.1), were measured for the amplification of serial dilutions of a DNA plasmid containing the target sequence. The standard curve possessed a correlation coefficient of 0.9428 with a slope of -84.079 and y-intercept value of 1936.2. Additionally, an attempt was made to detect viral DNA in 17 specimens collected from Kaposi's sarcomas and two cell lines obtained from primary effusion lymphomas. HHV-8 DNA was detected in 14 of the 17 Kaposi's sarcoma tissue samples and both of the primary effusion lymphoma cell lines. Viral DNA was not detected in HHV-8 LAMP-negative samples using the real-time PCR method.

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Year:  2007        PMID: 17512061     DOI: 10.1016/j.jviromet.2007.03.021

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  4 in total

1.  Real-time reverse-transcription loop-mediated isothermal amplification for rapid detection of rift valley Fever virus.

Authors:  Christophe N Peyrefitte; Laetitia Boubis; Daniel Coudrier; Michèle Bouloy; Marc Grandadam; Hugues J Tolou; Sébastien Plumet
Journal:  J Clin Microbiol       Date:  2008-09-17       Impact factor: 5.948

2.  A portable device for nucleic acid quantification powered by sunlight, a flame or electricity.

Authors:  Ryan Snodgrass; Andrea Gardner; Aggrey Semeere; Varun Lingaiah Kopparthy; Jens Duru; Toby Maurer; Jeffrey Martin; Ethel Cesarman; David Erickson
Journal:  Nat Biomed Eng       Date:  2018-09-11       Impact factor: 25.671

Review 3.  Alternative molecular tests for virological diagnosis.

Authors:  Francesca Sidoti; Massimiliano Bergallo; Cristina Costa; Rossana Cavallo
Journal:  Mol Biotechnol       Date:  2013-03       Impact factor: 2.695

Review 4.  Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases.

Authors:  Manmohan Parida; Santhosh Sannarangaiah; Paban Kumar Dash; P V L Rao; Kouichi Morita
Journal:  Rev Med Virol       Date:  2008 Nov-Dec       Impact factor: 6.989

  4 in total

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