Literature DB >> 17506662

Using genomics to study how chromatin influences gene expression.

Douglas R Higgs1, Douglas Vernimmen, Jim Hughes, Richard Gibbons.   

Abstract

A postgenome challenge is to understand how the code in DNA is converted into the biological processes underlying various cell fates. By establishing the appropriate technical tools, we are moving from an era in which such questions have been asked by studying individual genes to one in which large domains, whole chromosomes, and the entire human genome can be investigated. These developments will allow us to study in parallel the transcriptional program and components of the epigenetic program (nuclear position, timing of replication, chromatin structure and modification, DNA methylation) to determine the hierarchy and order of events required to switch genes on and off during differentiation and development.

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Year:  2007        PMID: 17506662     DOI: 10.1146/annurev.genom.8.080706.092323

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  11 in total

Review 1.  Epigenetic regulation and measurement of epigenetic changes.

Authors:  Kimberly E Stephens; Christine A Miaskowski; Jon D Levine; Clive R Pullinger; Bradley E Aouizerat
Journal:  Biol Res Nurs       Date:  2012-06-03       Impact factor: 2.522

Review 2.  Structure determination of genomic domains by satisfaction of spatial restraints.

Authors:  Davide Baù; Marc A Marti-Renom
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

Review 3.  Decoding the non-coding genome: elucidating genetic risk outside the coding genome.

Authors:  C L Barr; V L Misener
Journal:  Genes Brain Behav       Date:  2016-01-04       Impact factor: 3.449

4.  The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.

Authors:  Davide Baù; Amartya Sanyal; Bryan R Lajoie; Emidio Capriotti; Meg Byron; Jeanne B Lawrence; Job Dekker; Marc A Marti-Renom
Journal:  Nat Struct Mol Biol       Date:  2010-12-05       Impact factor: 15.369

5.  Trichostatin differentially regulates Th1 and Th2 responses and alleviates rheumatoid arthritis in mice.

Authors:  Xiaorong Zhou; Xing Hua; Xiaoling Ding; Yonghua Bian; Xiaoying Wang
Journal:  J Clin Immunol       Date:  2011-02-09       Impact factor: 8.317

Review 6.  Application of OMICS technologies in occupational and environmental health research; current status and projections.

Authors:  J Vlaanderen; L E Moore; M T Smith; Q Lan; L Zhang; C F Skibola; N Rothman; R Vermeulen
Journal:  Occup Environ Med       Date:  2009-11-20       Impact factor: 4.402

7.  CHD7 mutations in patients initially diagnosed with Kallmann syndrome--the clinical overlap with CHARGE syndrome.

Authors:  M C J Jongmans; C M A van Ravenswaaij-Arts; N Pitteloud; T Ogata; N Sato; H L Claahsen-van der Grinten; K van der Donk; S Seminara; J E H Bergman; H G Brunner; W F Crowley; L H Hoefsloot
Journal:  Clin Genet       Date:  2008-11-17       Impact factor: 4.438

8.  An insulator embedded in the chicken α-globin locus regulates chromatin domain configuration and differential gene expression.

Authors:  Mayra Furlan-Magaril; Eria Rebollar; Georgina Guerrero; Almudena Fernández; Eduardo Moltó; Edgar González-Buendía; Marta Cantero; Lluís Montoliu; Félix Recillas-Targa
Journal:  Nucleic Acids Res       Date:  2010-09-02       Impact factor: 16.971

9.  Allele-specific expression assays using Solexa.

Authors:  Bradley J Main; Ryan D Bickel; Lauren M McIntyre; Rita M Graze; Peter P Calabrese; Sergey V Nuzhdin
Journal:  BMC Genomics       Date:  2009-09-09       Impact factor: 3.969

10.  Studying human telomerase gene transcription by a chromatinized reporter generated by recombinase-mediated targeting of a bacterial artificial chromosome.

Authors:  Shuwen Wang; Yuanjun Zhao; Melanie A Leiby; Jiyue Zhu
Journal:  Nucleic Acids Res       Date:  2009-06-15       Impact factor: 16.971

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