Literature DB >> 17501293

Generalized neural-network representation of high-dimensional potential-energy surfaces.

Jörg Behler1, Michele Parrinello.   

Abstract

The accurate description of chemical processes often requires the use of computationally demanding methods like density-functional theory (DFT), making long simulations of large systems unfeasible. In this Letter we introduce a new kind of neural-network representation of DFT potential-energy surfaces, which provides the energy and forces as a function of all atomic positions in systems of arbitrary size and is several orders of magnitude faster than DFT. The high accuracy of the method is demonstrated for bulk silicon and compared with empirical potentials and DFT. The method is general and can be applied to all types of periodic and nonperiodic systems.

Entities:  

Year:  2007        PMID: 17501293     DOI: 10.1103/PhysRevLett.98.146401

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  167 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

Review 2.  Machine Learning Force Fields and Coarse-Grained Variables in Molecular Dynamics: Application to Materials and Biological Systems.

Authors:  Paraskevi Gkeka; Gabriel Stoltz; Amir Barati Farimani; Zineb Belkacemi; Michele Ceriotti; John D Chodera; Aaron R Dinner; Andrew L Ferguson; Jean-Bernard Maillet; Hervé Minoux; Christine Peter; Fabio Pietrucci; Ana Silveira; Alexandre Tkatchenko; Zofia Trstanova; Rafal Wiewiora; Tony Lelièvre
Journal:  J Chem Theory Comput       Date:  2020-07-16       Impact factor: 6.006

Review 3.  QSAR without borders.

Authors:  Eugene N Muratov; Jürgen Bajorath; Robert P Sheridan; Igor V Tetko; Dmitry Filimonov; Vladimir Poroikov; Tudor I Oprea; Igor I Baskin; Alexandre Varnek; Adrian Roitberg; Olexandr Isayev; Stefano Curtarolo; Denis Fourches; Yoram Cohen; Alan Aspuru-Guzik; David A Winkler; Dimitris Agrafiotis; Artem Cherkasov; Alexander Tropsha
Journal:  Chem Soc Rev       Date:  2020-05-01       Impact factor: 54.564

4.  Characterizing Protein-Ligand Binding Using Atomistic Simulation and Machine Learning: Application to Drug Resistance in HIV-1 Protease.

Authors:  Troy W Whitfield; Debra A Ragland; Konstantin B Zeldovich; Celia A Schiffer
Journal:  J Chem Theory Comput       Date:  2020-01-16       Impact factor: 6.006

5.  Neural networks-based variationally enhanced sampling.

Authors:  Luigi Bonati; Yue-Yu Zhang; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-15       Impact factor: 11.205

6.  On the chain-melted phase of matter.

Authors:  Victor Naden Robinson; Hongxiang Zong; Graeme J Ackland; Gavin Woolman; Andreas Hermann
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-11       Impact factor: 11.205

7.  Machine learning provides realistic model of complex phase transition.

Authors:  Sandro Scandolo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-08       Impact factor: 11.205

8.  Spherical harmonics based descriptor for neural network potentials: Structure and dynamics of Au147 nanocluster.

Authors:  Shweta Jindal; Siva Chiriki; Satya S Bulusu
Journal:  J Chem Phys       Date:  2017-05-28       Impact factor: 3.488

9.  Machine learning determination of atomic dynamics at grain boundaries.

Authors:  Tristan A Sharp; Spencer L Thomas; Ekin D Cubuk; Samuel S Schoenholz; David J Srolovitz; Andrea J Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-09       Impact factor: 11.205

10.  Ab initio thermodynamics of liquid and solid water.

Authors:  Bingqing Cheng; Edgar A Engel; Jörg Behler; Christoph Dellago; Michele Ceriotti
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-04       Impact factor: 11.205

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