Literature DB >> 18556763

Dynamics of chromatin decondensation reveals the structural integrity of a mechanically prestressed nucleus.

Aprotim Mazumder1, T Roopa, Aakash Basu, L Mahadevan, G V Shivashankar.   

Abstract

Genome organization within the cell nucleus is a result of chromatin condensation achieved by histone tail-tail interactions and other nuclear proteins that counter the outward entropic pressure of the polymeric DNA. We probed the entropic swelling of chromatin driven by enzymatic disruption of these interactions in isolated mammalian cell nuclei. The large-scale decondensation of chromatin and the eventual rupture of the nuclear membrane and lamin network due to this entropic pressure were observed by fluorescence imaging. This swelling was accompanied by nuclear softening, an effect that we quantified by measuring the fluctuations of an optically trapped bead adhered onto the nucleus. We also measured the pressure at which the nuclear scaffold ruptured using an atomic force microscope cantilever. A simple theory based on a balance of forces in a swelling porous gel quantitatively explains the diffusive dynamics of swelling. Our experiments on decondensation of chromatin in nuclei suggest that its compaction is a critical parameter in controlling nuclear stability.

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Year:  2008        PMID: 18556763      PMCID: PMC2527259          DOI: 10.1529/biophysj.108.132274

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  27 in total

1.  Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome.

Authors:  R U Protacio; G Li; P T Lowary; J Widom
Journal:  Mol Cell Biol       Date:  2000-12       Impact factor: 4.272

Review 2.  Functional consequences of histone modifications.

Authors:  Masayoshi Iizuka; M Mitchell Smith
Journal:  Curr Opin Genet Dev       Date:  2003-04       Impact factor: 5.578

3.  Chromatin fiber folding: requirement for the histone H4 N-terminal tail.

Authors:  Benedetta Dorigo; Thomas Schalch; Kerstin Bystricky; Timothy J Richmond
Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

Review 4.  The nucleosome: from genomic organization to genomic regulation.

Authors:  Sepideh Khorasanizadeh
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

5.  Nuclear envelope breakdown requires overcoming the mechanical integrity of the nuclear lamina.

Authors:  Porntula Panorchan; Benjamin W Schafer; Denis Wirtz; Yiider Tseng
Journal:  J Biol Chem       Date:  2004-07-30       Impact factor: 5.157

6.  The nuclear envelope lamina network has elasticity and a compressibility limit suggestive of a molecular shock absorber.

Authors:  Kris Noel Dahl; Samuel M Kahn; Katherine L Wilson; Dennis E Discher
Journal:  J Cell Sci       Date:  2004-08-25       Impact factor: 5.285

7.  Role of histone tails in the conformation and interactions of nucleosome core particles.

Authors:  Aurélie Bertin; Amélie Leforestier; Dominique Durand; Françoise Livolant
Journal:  Biochemistry       Date:  2004-04-27       Impact factor: 3.162

8.  The N-terminal tails of the H2A-H2B histones affect dimer structure and stability.

Authors:  Brandon J Placek; Lisa M Gloss
Journal:  Biochemistry       Date:  2002-12-17       Impact factor: 3.162

9.  Physical plasticity of the nucleus in stem cell differentiation.

Authors:  J David Pajerowski; Kris Noel Dahl; Franklin L Zhong; Paul J Sammak; Dennis E Discher
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-24       Impact factor: 11.205

10.  The inner nuclear membrane protein lamin B receptor forms distinct microdomains and links epigenetically marked chromatin to the nuclear envelope.

Authors:  Dimitra Makatsori; Niki Kourmouli; Hara Polioudaki; Leonard D Shultz; Kelvin McLean; Panayiotis A Theodoropoulos; Prim B Singh; Spyros D Georgatos
Journal:  J Biol Chem       Date:  2004-03-31       Impact factor: 5.157

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  63 in total

1.  Microconstriction arrays for high-throughput quantitative measurements of cell mechanical properties.

Authors:  Janina R Lange; Julian Steinwachs; Thorsten Kolb; Lena A Lautscham; Irina Harder; Graeme Whyte; Ben Fabry
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

2.  Integrin adhesion drives the emergent polarization of active cytoskeletal stresses to pattern cell delamination.

Authors:  C Meghana; Nisha Ramdas; Feroz Meeran Hameed; Madan Rao; G V Shivashankar; Maithreyi Narasimha
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-13       Impact factor: 11.205

3.  Cytoskeletal prestress regulates nuclear shape and stiffness in cardiac myocytes.

Authors:  Hyungsuk Lee; William J Adams; Patrick W Alford; Megan L McCain; Adam W Feinberg; Sean P Sheehy; Josue A Goss; Kevin Kit Parker
Journal:  Exp Biol Med (Maywood)       Date:  2015-04-23

4.  Emergence of a prestressed eukaryotic nucleus during cellular differentiation and development.

Authors:  Aprotim Mazumder; G V Shivashankar
Journal:  J R Soc Interface       Date:  2010-03-31       Impact factor: 4.118

5.  A Systematic Analysis of Factors Localized to Damaged Chromatin Reveals PARP-Dependent Recruitment of Transcription Factors.

Authors:  Lior Izhar; Britt Adamson; Alberto Ciccia; Jedd Lewis; Laura Pontano-Vaites; Yumei Leng; Anthony C Liang; Thomas F Westbrook; J Wade Harper; Stephen J Elledge
Journal:  Cell Rep       Date:  2015-05-21       Impact factor: 9.423

Review 6.  Mechanics of nuclear membranes.

Authors:  Ashutosh Agrawal; Tanmay P Lele
Journal:  J Cell Sci       Date:  2019-07-15       Impact factor: 5.285

7.  Regulation of nuclear architecture, mechanics, and nucleocytoplasmic shuttling of epigenetic factors by cell geometric constraints.

Authors:  Farid Alisafaei; Doorgesh Sharma Jokhun; G V Shivashankar; Vivek B Shenoy
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-17       Impact factor: 11.205

Review 8.  Mechanosensitive mechanisms in transcriptional regulation.

Authors:  Akiko Mammoto; Tadanori Mammoto; Donald E Ingber
Journal:  J Cell Sci       Date:  2012-07-13       Impact factor: 5.285

9.  Magnetic force micropiston: an integrated force/microfluidic device for the application of compressive forces in a confined environment.

Authors:  J K Fisher; N Kleckner
Journal:  Rev Sci Instrum       Date:  2014-02       Impact factor: 1.523

10.  A universal description for the experimental behavior of salt-(in)dependent oligocation-induced DNA condensation.

Authors:  Nikolay Korolev; Nikolay V Berezhnoy; Khee Dong Eom; James P Tam; Lars Nordenskiöld
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

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