Literature DB >> 17492703

Modeling promiscuity based on in vitro safety pharmacology profiling data.

Kamal Azzaoui1, Jacques Hamon, Bernard Faller, Steven Whitebread, Edgar Jacoby, Andreas Bender, Jeremy L Jenkins, Laszlo Urban.   

Abstract

This study describes a method for mining and modeling binding data obtained from a large panel of targets (in vitro safety pharmacology) to distinguish differences between promiscuous and selective compounds. Two naïve Bayes models for promiscuity and selectivity were generated and validated on a test set as well as publicly available drug databases. The model shows a higher score (lower promiscuity) for marketed drugs than for compounds in early development or compounds that failed during clinical development. Such models can be used in triaging high-throughput screening data or for lead optimization.

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Year:  2007        PMID: 17492703     DOI: 10.1002/cmdc.200700036

Source DB:  PubMed          Journal:  ChemMedChem        ISSN: 1860-7179            Impact factor:   3.466


  35 in total

Review 1.  The influence of the 'organizational factor' on compound quality in drug discovery.

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2.  Dark chemical matter as a promising starting point for drug lead discovery.

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Journal:  Nat Chem Biol       Date:  2015-10-19       Impact factor: 15.040

Review 3.  Protein promiscuity and its implications for biotechnology.

Authors:  Irene Nobeli; Angelo D Favia; Janet M Thornton
Journal:  Nat Biotechnol       Date:  2009-02       Impact factor: 54.908

4.  Systematic analysis of gene properties influencing organ system phenotypes in mammalian perturbations.

Authors:  Ingo Vogt; Jeanette Prinz; Karolina Worf; Monica Campillos
Journal:  Bioinformatics       Date:  2014-07-23       Impact factor: 6.937

5.  Finding promiscuous old drugs for new uses.

Authors:  Sean Ekins; Antony J Williams
Journal:  Pharm Res       Date:  2011-05-24       Impact factor: 4.200

6.  Enhancing Molecular Promiscuity Evaluation Through Assay Profiles.

Authors:  Sorin Avram; Ramona Curpan; Alina Bora; Cristian Neanu; Liliana Halip
Journal:  Pharm Res       Date:  2018-10-18       Impact factor: 4.200

7.  Targeting ligand-gated ion channels in neurology and psychiatry: is pharmacological promiscuity an obstacle or an opportunity?

Authors:  Matt T Bianchi; Emmanuel J Botzolakis
Journal:  BMC Pharmacol       Date:  2010-03-02

Review 8.  The chemical basis of pharmacology.

Authors:  Michael J Keiser; John J Irwin; Brian K Shoichet
Journal:  Biochemistry       Date:  2010-11-12       Impact factor: 3.162

9.  A survey of across-target bioactivity results of small molecules in PubChem.

Authors:  Lianyi Han; Yanli Wang; Stephen H Bryant
Journal:  Bioinformatics       Date:  2009-06-23       Impact factor: 6.937

10.  Challenges predicting ligand-receptor interactions of promiscuous proteins: the nuclear receptor PXR.

Authors:  Sean Ekins; Sandhya Kortagere; Manisha Iyer; Erica J Reschly; Markus A Lill; Matthew R Redinbo; Matthew D Krasowski
Journal:  PLoS Comput Biol       Date:  2009-12-11       Impact factor: 4.475

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