Literature DB >> 17483477

The plastic landscape of repeat proteins.

Diego U Ferreiro1, Elizabeth A Komives.   

Abstract

Mesh：

Year:  2007        PMID： 17483477      PMCID： PMC1876514          DOI： 10.1073/pnas.0702682104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  25 in total

1.  Stepwise unfolding of ankyrin repeats in a single protein revealed by atomic force microscopy.

Authors:  Lewyn Li; Svava Wetzel; Andreas Plückthun; Julio M Fernandez
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

2.  The notch ankyrin domain folds via a discrete, centralized pathway.

Authors:  Christina Marchetti Bradley; Doug Barrick
Journal:  Structure       Date:  2006-08       Impact factor: 5.006

Review 3.  Recent successes of the energy landscape theory of protein folding and function.

Authors:  P G Wolynes
Journal:  Q Rev Biophys       Date:  2005-11       Impact factor: 5.318

4.  Enhancing the stability and folding rate of a repeat protein through the addition of consensus repeats.

Authors:  Katherine W Tripp; Doug Barrick
Journal:  J Mol Biol       Date:  2006-10-06       Impact factor: 5.469

5.  Predicting coupling limits from an experimentally determined energy landscape.

Authors:  Timothy O Street; Christina M Bradley; Doug Barrick
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-14       Impact factor: 11.205

6.  Stabilizing IkappaBalpha by "consensus" design.

Authors:  Diego U Ferreiro; Carla F Cervantes; Stephanie M E Truhlar; Samuel S Cho; Peter G Wolynes; Elizabeth A Komives
Journal:  J Mol Biol       Date:  2006-11-15       Impact factor: 5.469

7.  Regions of IkappaBalpha that are critical for its inhibition of NF-kappaB.DNA interaction fold upon binding to NF-kappaB.

Authors:  Stephanie M E Truhlar; Justin W Torpey; Elizabeth A Komives
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-05       Impact factor: 11.205

8.  Studies of the ankyrin repeats of the Drosophila melanogaster Notch receptor. 2. Solution stability and cooperativity of unfolding.

Authors:  M E Zweifel; D Barrick
Journal:  Biochemistry       Date:  2001-12-04       Impact factor: 3.162

9.  Biophysical characterisation of the small ankyrin repeat protein myotrophin.

Authors:  Alan R Lowe; Laura S Itzhaki
Journal:  J Mol Biol       Date:  2006-10-21       Impact factor: 5.469

10.  Probing a moving target with a plastic unfolding intermediate of an ankyrin-repeat protein.

Authors:  Nicolas D Werbeck; Laura S Itzhaki
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-02       Impact factor: 11.205
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  12 in total

Review 1.  Folding landscapes of ankyrin repeat proteins: experiments meet theory.

Authors:  Doug Barrick; Diego U Ferreiro; Elizabeth A Komives
Journal:  Curr Opin Struct Biol       Date:  2008-02       Impact factor: 6.809

2.  Shifting transition states in the unfolding of a large ankyrin repeat protein.

Authors:  Nicolas D Werbeck; Pamela J E Rowling; Vasuki R Chellamuthu; Laura S Itzhaki
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-16       Impact factor: 11.205

3.  The capillarity picture and the kinetics of one-dimensional protein folding.

Authors:  Diego U Ferreiro; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-16       Impact factor: 11.205

4.  Mapping the energy landscape of repeat proteins using NMR-detected hydrogen exchange.

Authors:  Aitziber L Cortajarena; Simon G J Mochrie; Lynne Regan
Journal:  J Mol Biol       Date:  2008-02-29       Impact factor: 5.469

Review 5.  Frustration in biomolecules.

Authors:  Diego U Ferreiro; Elizabeth A Komives; Peter G Wolynes
Journal:  Q Rev Biophys       Date:  2014-09-16       Impact factor: 5.318

6.  Evolution and folding of repeat proteins.

Authors:  Ezequiel A Galpern; Jacopo Marchi; Thierry Mora; Aleksandra M Walczak; Diego U Ferreiro
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-29       Impact factor: 12.779

7.  A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes.

Authors:  Kerstin Röske; Mark F Foecking; Shibu Yooseph; John I Glass; Michael J Calcutt; Kim S Wise
Journal:  BMC Genomics       Date:  2010-07-13       Impact factor: 3.969

8.  Characterization of the unfolded state of repeat proteins.

Authors:  Amit Mor; Gilad Haran; Yaakov Levy
Journal:  HFSP J       Date:  2008-11-12

9.  A transcription blocker isolated from a designed repeat protein combinatorial library by in vivo functional screen.

Authors:  Elena B Tikhonova; Abdul S Ethayathulla; Yue Su; Parameswaran Hariharan; Shicong Xie; Lan Guan
Journal:  Sci Rep       Date:  2015-01-28       Impact factor: 4.379

10.  The energy landscapes of repeat-containing proteins: topology, cooperativity, and the folding funnels of one-dimensional architectures.

Authors:  Diego U Ferreiro; Aleksandra M Walczak; Elizabeth A Komives; Peter G Wolynes
Journal:  PLoS Comput Biol       Date:  2008-05-16       Impact factor: 4.475
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