Literature DB >> 1747788

Automated protein sequence pattern handling and PROSITE searching.

P R Sibbald1, H Sommerfeldt, P Argos.   

Abstract

The protein sequence searching program Scrutineer has been modified to search for targets from a file. We are distributing a reformatted file of PROSITES which can be read by Scrutineer. In addition, Scrutineer still accepts targets typed in interactively but can now write them out in the format required as input. Since the input format is the same as the output format, target management and re-use is simple.

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Year:  1991        PMID: 1747788     DOI: 10.1093/bioinformatics/7.4.535

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  5 in total

1.  Construction and analysis of a profile library characterizing groups of structurally known proteins.

Authors:  A Ogiwara; I Uchiyama; T Takagi; M Kanehisa
Journal:  Protein Sci       Date:  1996-10       Impact factor: 6.725

2.  The PROSITE dictionary of sites and patterns in proteins, its current status.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

3.  PROSITE: recent developments.

Authors:  A Bairoch; P Bucher
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

4.  An insight into the salivary transcriptome and proteome of the soft tick and vector of epizootic bovine abortion, Ornithodoros coriaceus.

Authors:  Ivo M B Francischetti; Zhaojing Meng; Ben J Mans; Nanda Gudderra; Mark Hall; Timothy D Veenstra; Van M Pham; Michail Kotsyfakis; José M C Ribeiro
Journal:  J Proteomics       Date:  2008-08-03       Impact factor: 4.044

5.  Virtual interactomics of proteins from biochemical standpoint.

Authors:  Jaroslav Kubrycht; Karel Sigler; Pavel Souček
Journal:  Mol Biol Int       Date:  2012-08-08
  5 in total

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