Literature DB >> 17477608

Dynamical properties of liquid water from ab initio molecular dynamics performed in the complete basis set limit.

Hee-Seung Lee1, Mark E Tuckerman.   

Abstract

Dynamical properties of liquid water were studied using Car-Parrinello [Phys. Rev. Lett. 55, 2471 (1985)] ab initio molecular dynamics (AIMD) simulations within the Kohn-Sham (KS) density functional theory employing the Becke-Lee-Yang-Parr exchange-correlation functional for the electronic structure. The KS orbitals were expanded in a discrete variable representation basis set, wherein the complete basis set limit can be easily reached and which, therefore, provides complete convergence of ionic forces. In order to minimize possible nonergodic behavior of the simulated water system in a constant energy (NVE) ensemble, a long equilibration run (30 ps) preceded a 60 ps long production run. The temperature drift during the entire 60 ps trajectory was found to be minimal. The diffusion coefficient [0.055 A2/ps] obtained from the present work for 32 D2O molecules is a factor of 4 smaller than the most up to date experimental value, but significantly larger than those of other recent AIMD studies. Adjusting the experimental result so as to match the finite-sized system used in the present study brings the comparison between theory and experiment to within a factor of 3. More importantly, the system is not observed to become "glassy" as has been reported in previous AIMD studies. The computed infrared spectrum is in good agreement with experimental data, especially in the low frequency regime where the translational and librational motions of water are manifested. The long simulation length also made it possible to perform detailed studies of hydrogen bond dynamics. The relaxation dynamics of hydrogen bonds observed in the present AIMD simulation is slower than those of popular force fields, such as the TIP4P potential, but comparable to that of the TIP5P potential.

Entities:  

Year:  2007        PMID: 17477608     DOI: 10.1063/1.2718521

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution I: Acid and Base Coordinate and Charge Dynamics.

Authors:  Snehasis Daschakraborty; Philip M Kiefer; Yifat Miller; Yair Motro; Dina Pines; Ehud Pines; James T Hynes
Journal:  J Phys Chem B       Date:  2016-03-02       Impact factor: 2.991

2.  Lagrangian formulation with dissipation of Born-Oppenheimer molecular dynamics using the density-functional tight-binding method.

Authors:  Guishan Zheng; Anders M N Niklasson; Martin Karplus
Journal:  J Chem Phys       Date:  2011-07-28       Impact factor: 3.488

3.  Connection between water's dynamical and structural properties: Insights from ab initio simulations.

Authors:  Cecilia Herrero; Michela Pauletti; Gabriele Tocci; Marcella Iannuzzi; Laurent Joly
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-19       Impact factor: 12.779

4.  Molecular Structure and Modeling of Water-Air and Ice-Air Interfaces Monitored by Sum-Frequency Generation.

Authors:  Fujie Tang; Tatsuhiko Ohto; Shumei Sun; Jérémy R Rouxel; Sho Imoto; Ellen H G Backus; Shaul Mukamel; Mischa Bonn; Yuki Nagata
Journal:  Chem Rev       Date:  2020-03-06       Impact factor: 60.622

5.  Anomalous water diffusion in salt solutions.

Authors:  Yun Ding; Ali A Hassanali; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-12       Impact factor: 11.205

Review 6.  Advanced Potential Energy Surfaces for Molecular Simulation.

Authors:  Alex Albaugh; Henry A Boateng; Richard T Bradshaw; Omar N Demerdash; Jacek Dziedzic; Yuezhi Mao; Daniel T Margul; Jason Swails; Qiao Zeng; David A Case; Peter Eastman; Lee-Ping Wang; Jonathan W Essex; Martin Head-Gordon; Vijay S Pande; Jay W Ponder; Yihan Shao; Chris-Kriton Skylaris; Ilian T Todorov; Mark E Tuckerman; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2016-09-22       Impact factor: 3.466

7.  Hydrogen-bond structure dynamics in bulk water: insights from ab initio simulations with coupled cluster theory.

Authors:  Jinfeng Liu; Xiao He; John Z H Zhang; Lian-Wen Qi
Journal:  Chem Sci       Date:  2017-12-04       Impact factor: 9.825

8.  Investigation of Nonlinear Output-Input Microwave Power of DMSO-Ethanol Mixture by Molecular Dynamics Simulation.

Authors:  Min Zhou; Ke Cheng; Haoran Sun; Guozhu Jia
Journal:  Sci Rep       Date:  2018-05-08       Impact factor: 4.379

9.  OH- and H3O+ Diffusion in Model AEMs and PEMs at Low Hydration: Insights from Ab Initio Molecular Dynamics.

Authors:  Tamar Zelovich; Mark E Tuckerman
Journal:  Membranes (Basel)       Date:  2021-05-12

10.  A Comparison of QM/MM Simulations with and without the Drude Oscillator Model Based on Hydration Free Energies of Simple Solutes.

Authors:  Gerhard König; Frank C Pickard; Jing Huang; Walter Thiel; Alexander D MacKerell; Bernard R Brooks; Darrin M York
Journal:  Molecules       Date:  2018-10-19       Impact factor: 4.411

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