Literature DB >> 17473320

Multiobjective optimization in bioinformatics and computational biology.

Julia Handl1, Douglas B Kell, Joshua Knowles.   

Abstract

This paper reviews the application of multiobjective optimization in the fields of bioinformatics and computational biology. A survey of existing work, organized by application area, forms the main body of the review, following an introduction to the key concepts in multiobjective optimization. An original contribution of the review is the identification of five distinct "contexts," giving rise to multiple objectives: These are used to explain the reasons behind the use of multiobjective optimization in each application area and also to point the way to potential future uses of the technique.

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Year:  2007        PMID: 17473320     DOI: 10.1109/TCBB.2007.070203

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  42 in total

1.  Design of a semisolid vaginal microbicide gel by relating composition to properties and performance.

Authors:  Alamelu Mahalingam; Eric Smith; Judit Fabian; Festo R Damian; Jennifer J Peters; Meredith R Clark; David R Friend; David F Katz; Patrick F Kiser
Journal:  Pharm Res       Date:  2010-09-15       Impact factor: 4.200

2.  Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons.

Authors:  Timothy H Rumbell; Danel Draguljić; Aniruddha Yadav; Patrick R Hof; Jennifer I Luebke; Christina M Weaver
Journal:  J Comput Neurosci       Date:  2016-04-22       Impact factor: 1.621

3.  Travel in city road networks follows similar transport trade-off principles to neural and plant arbors.

Authors:  Jonathan Y Suen; Saket Navlakha
Journal:  J R Soc Interface       Date:  2019-05-31       Impact factor: 4.118

4.  Multiobjective blockmodeling for social network analysis.

Authors:  Michael Brusco; Patrick Doreian; Douglas Steinley; Cinthia B Satornino
Journal:  Psychometrika       Date:  2012-12-29       Impact factor: 2.500

5.  Playing 'hide-and-seek' with factor H: game-theoretical analysis of a single nucleotide polymorphism.

Authors:  Sabine Hummert; Christina Glock; Stefan N Lang; Christian Hummert; Christine Skerka; Peter F Zipfel; Sebastian Germerodt; Stefan Schuster
Journal:  J R Soc Interface       Date:  2018-05       Impact factor: 4.118

6.  A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments.

Authors:  Lu He; Alan M Friedman; Chris Bailey-Kellogg
Journal:  Proteins       Date:  2011-12-16

7.  Multi-objective optimal chemotherapy control model for cancer treatment.

Authors:  S Algoul; M S Alam; M A Hossain; M A A Majumder
Journal:  Med Biol Eng Comput       Date:  2010-10-01       Impact factor: 2.602

8.  Cross validation issues in multiobjective clustering.

Authors:  Michael J Brusco; Douglas Steinley
Journal:  Br J Math Stat Psychol       Date:  2008-12-03       Impact factor: 3.380

9.  Systematic identification of barriers to human iPSC generation.

Authors:  Han Qin; Aaron Diaz; Laure Blouin; Robert Jan Lebbink; Weronika Patena; Priscilia Tanbun; Emily M LeProust; Michael T McManus; Jun S Song; Miguel Ramalho-Santos
Journal:  Cell       Date:  2014-07-17       Impact factor: 41.582

10.  Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis.

Authors:  Yves Fomekong-Nanfack; Marten Postma; Jaap A Kaandorp
Journal:  BMC Syst Biol       Date:  2009-09-21
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