Literature DB >> 17473016

Conformational changes of glucose/galactose-binding protein illuminated by open, unliganded, and ultra-high-resolution ligand-bound structures.

M Jack Borrok1, Laura L Kiessling, Katrina T Forest.   

Abstract

D-Glucose/D-Galactose-binding protein (GGBP) mediates chemotaxis toward and active transport of glucose and galactose in a number of bacterial species. GGBP, like other periplasmic binding proteins, can exist in open (ligand-free) and closed (ligand-bound) states. We report a 0.92 angstroms resolution structure of GGBP from Escherichia coli in the glucose-bound state and the first structure of an open, unbound form of GGBP (at 1.55 angstroms resolution). These structures vary in the angle between the two structural domains; the observed difference of 31 degrees arises from torsion angle changes in a three-segment hinge. A comparison with the closely related periplasmic receptors, ribose- and allose-binding proteins, shows that the GGBP hinge residue positions that undergo the largest conformational changes are different. Furthermore, the high-quality data collected for the atomic resolution glucose-bound structure allow for the refinement of specific hydrogen atom positions, the assignment of alternate side chain conformations, the first description of CO(2) trapped after radiation-induced decarboxylation, and insight into the role of the exo-anomeric effect in sugar binding. Together, these structures provide insight into how the hinge-bending movement of GGBP facilitates ligand binding, transport, and signaling.

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Year:  2007        PMID: 17473016      PMCID: PMC2206672          DOI: 10.1110/ps.062707807

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  55 in total

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

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Review 3.  The Venus flytrap of periplasmic binding proteins: an ancient protein module present in multiple drug receptors.

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Journal:  AAPS PharmSci       Date:  1999

4.  X-ray structures of the leucine-binding protein illustrate conformational changes and the basis of ligand specificity.

Authors:  Ulrika Magnusson; Branka Salopek-Sondi; Linda A Luck; Sherry L Mowbray
Journal:  J Biol Chem       Date:  2003-12-12       Impact factor: 5.157

5.  Structural effects of radiation damage and its potential for phasing.

Authors:  Sankaran Banumathi; Petrus H Zwart; Udupi A Ramagopal; Miroslawa Dauter; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-05-21

6.  Structure of the L-leucine-binding protein refined at 2.4 A resolution and comparison with the Leu/Ile/Val-binding protein structure.

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Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

8.  Regulation of LuxPQ receptor activity by the quorum-sensing signal autoinducer-2.

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Journal:  Mol Cell       Date:  2005-05-27       Impact factor: 17.970

9.  Structure of D-allose binding protein from Escherichia coli bound to D-allose at 1.8 A resolution.

Authors:  B N Chaudhuri; J Ko; C Park; T A Jones; S L Mowbray
Journal:  J Mol Biol       Date:  1999-03-12       Impact factor: 5.469

10.  Large amplitude twisting motions of an interdomain hinge: a disulfide trapping study of the galactose-glucose binding protein.

Authors:  C L Careaga; J Sutherland; J Sabeti; J J Falke
Journal:  Biochemistry       Date:  1995-03-07       Impact factor: 3.162

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  40 in total

1.  Crystal stuctures of MglB-2 (TP0684), a topologically variant d-glucose-binding protein from Treponema pallidum, reveal a ligand-induced conformational change.

Authors:  Chad A Brautigam; Ranjit K Deka; Wei Z Liu; Michael V Norgard
Journal:  Protein Sci       Date:  2018-02-01       Impact factor: 6.725

2.  Study of intra-inter species protein-protein interactions for potential drug targets identification and subsequent drug design for Escherichia coli O104:H4 C277-11.

Authors:  Shakhinur Islam Mondal; Zabed Mahmud; Montasir Elahi; Arzuba Akter; Nurnabi Azad Jewel; Md Muzahidul Islam; Sabiha Ferdous; Taisei Kikuchi
Journal:  In Silico Pharmacol       Date:  2017-04-11

3.  Towards the prediction of order parameters from molecular dynamics simulations in proteins.

Authors:  Juan R Perilla; Thomas B Woolf
Journal:  J Chem Phys       Date:  2012-04-28       Impact factor: 3.488

4.  Effect of acrylodan conjugation and forced oxidation on the structural integrity, conformational stability, and binding activity of a glucose binding protein SM4 used in a prototype continuous glucose monitor.

Authors:  John M Hickey; Neha Sahni; Rajoshi Chaudhuri; Ajit D'Souza; Andrew Metters; Sangeeta B Joshi; C Russell Middaugh; David B Volkin
Journal:  Protein Sci       Date:  2017-02-12       Impact factor: 6.725

5.  Structure of a periplasmic glucose-binding protein from Thermotoga maritima.

Authors:  Kandavelu Palani; Desigan Kumaran; Stephen K Burley; Subramanyam Swaminathan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-11-19

Review 6.  Overview of fluorescence glucose sensing: a technology with a bright future.

Authors:  David C Klonoff
Journal:  J Diabetes Sci Technol       Date:  2012-11-01

Review 7.  Fluorescence intensity- and lifetime-based glucose sensing using glucose/galactose-binding protein.

Authors:  John C Pickup; Faaizah Khan; Zheng-Liang Zhi; Jonathan Coulter; David J S Birch
Journal:  J Diabetes Sci Technol       Date:  2013-01-01

8.  Using modern approaches to sedimentation velocity to detect conformational changes in proteins.

Authors:  Chad A Brautigam; Shih-Chia Tso; Ranjit K Deka; Wei Z Liu; Michael V Norgard
Journal:  Eur Biophys J       Date:  2020-08-05       Impact factor: 1.733

9.  A bipartite periplasmic receptor-diguanylate cyclase pair (XAC2383-XAC2382) in the bacterium Xanthomonas citri.

Authors:  Raphael D Teixeira; Cristiane R Guzzo; Santiago Justo Arévalo; Maxuel O Andrade; Josielle Abrahão; Robson F de Souza; Chuck S Farah
Journal:  J Biol Chem       Date:  2018-05-04       Impact factor: 5.157

10.  Ligand-induced conformational changes in a thermophilic ribose-binding protein.

Authors:  Matthew J Cuneo; Lorena S Beese; Homme W Hellinga
Journal:  BMC Struct Biol       Date:  2008-11-19
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