Literature DB >> 14672931

X-ray structures of the leucine-binding protein illustrate conformational changes and the basis of ligand specificity.

Ulrika Magnusson1, Branka Salopek-Sondi, Linda A Luck, Sherry L Mowbray.   

Abstract

The periplasmic leucine-binding protein is the primary receptor for the leucine transport system in Escherichia coli. We report here the structure of an open ligand-free form solved by molecular replacement and refined at 1.5-A resolution. In addition, two closed ligand-bound structures of the same protein are presented, a phenylalanine-bound form at 1.8 A and a leucine-bound structure at a nominal resolution of 2.4 A. These structures show the basis of this protein's ligand specificity, as well as illustrating the conformational changes that are associated with ligand binding. Comparison with earlier structures provides further information about solution conformations, as well as the different specificity of the closely related leucine/isoleucine/valine-binding protein.

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Year:  2003        PMID: 14672931     DOI: 10.1074/jbc.M311890200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  32 in total

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Authors:  Po-Chia Chen; Jochen S Hub
Journal:  Biophys J       Date:  2015-05-19       Impact factor: 4.033

Review 3.  Normal mode analysis as a method to derive protein dynamics information from the Protein Data Bank.

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Journal:  Biophys Rev       Date:  2017-11-04

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Journal:  J Biol Chem       Date:  2018-02-14       Impact factor: 5.157

5.  Conformational flexibility of the leucine binding protein examined by protein domain coarse-grained molecular dynamics.

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Journal:  J Mol Model       Date:  2013-09-19       Impact factor: 1.810

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8.  Ligand binding and crystal structures of the substrate-binding domain of the ABC transporter OpuA.

Authors:  Justina C Wolters; Ronnie P-A Berntsson; Nadia Gul; Akira Karasawa; Andy-Mark W H Thunnissen; Dirk-Jan Slotboom; Bert Poolman
Journal:  PLoS One       Date:  2010-04-29       Impact factor: 3.240

9.  Proline antagonizes GABA-induced quenching of quorum-sensing in Agrobacterium tumefaciens.

Authors:  E Haudecoeur; S Planamente; A Cirou; M Tannières; B J Shelp; S Moréra; D Faure
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-13       Impact factor: 11.205

10.  Ligand-induced conformational changes in a thermophilic ribose-binding protein.

Authors:  Matthew J Cuneo; Lorena S Beese; Homme W Hellinga
Journal:  BMC Struct Biol       Date:  2008-11-19
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