Literature DB >> 17469821

Force-induced prolyl cis-trans isomerization in elastin-like polypeptides.

Alexei Valiaev1, Dong Woo Lim, Terrence G Oas, Ashutosh Chilkoti, Stefan Zauscher.   

Abstract

Elastin-like polypeptides (ELPs) are stimulus-responsive polymers that contain repeats of five amino acids, Val-Pro-Gly-Xaa-Gly (VPGXG), where Xaa is a guest residue that can be any amino acid with the exception of proline. While studying the conformational mechanics of ELPs over a range of solvent conditions by single-molecule force spectroscopy, we noticed that some force-extension curves showed temperature-independent, extensional transitions that could not be fitted with a freely jointed chain or worm-like chain model. Here we show that the observed molecular elongation results from the force-induced peptidyl-prolyl cis-trans isomerization in prolines, which are repeated every fifth residue in the main chain of ELPs. Control experiments with poly(L-proline) demonstrate the similarity of the conformational transition between poly(L-proline) and ELPs. In contrast, the force-extension behavior of poly(L-lysine) showed no deviation in the relevant force range. Force-extension curves in hysteresis experiments showed an elongational difference between extension and relaxation pathways that suggests that the cis conformational state of the prolines could be exhausted on the time scale of the experiment. We present further computational evidence for this mechanism by Monte Carlo simulation of the force-extension behavior using an elastically coupled, two-state model. We believe ours is the first demonstration of force-induced prolyl cis-trans isomerization in proline-containing polypeptides. Our results suggest that single-molecule force spectroscopy could provide an alternate means to assay this important conformational transition in polypeptides.

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Year:  2007        PMID: 17469821     DOI: 10.1021/ja070147r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Modeling the Early Stages of Phase Separation in Disordered Elastin-like Proteins.

Authors:  Yue Zhang; Valeria Zai-Rose; Cody J Price; Nicholas A Ezzell; Gene L Bidwell; John J Correia; Nicholas C Fitzkee
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

2.  Insights into the Mechanical Properties of the Kinesin Neck Linker Domain from Sequence Analysis and Molecular Dynamics Simulations.

Authors:  Venkatesh Hariharan; William O Hancock
Journal:  Cell Mol Bioeng       Date:  2009-06-01       Impact factor: 2.321

Review 3.  Biology and physics of von Willebrand factor concatamers.

Authors:  T A Springer
Journal:  J Thromb Haemost       Date:  2011-07       Impact factor: 5.824

4.  A structural basis for sustained bacterial adhesion: biomechanical properties of CFA/I pili.

Authors:  Magnus Andersson; Oscar Björnham; Mats Svantesson; Arwa Badahdah; Bernt Eric Uhlin; Esther Bullitt
Journal:  J Mol Biol       Date:  2011-12-09       Impact factor: 5.469

5.  Fast and reversible crosslinking of a silk elastin-like polymer.

Authors:  Constancio Gonzalez-Obeso; J C Rodriguez-Cabello; David L Kaplan
Journal:  Acta Biomater       Date:  2021-12-28       Impact factor: 8.947

6.  Mechanoenzymatic cleavage of the ultralarge vascular protein von Willebrand factor.

Authors:  Xiaohui Zhang; Kenneth Halvorsen; Cheng-Zhong Zhang; Wesley P Wong; Timothy A Springer
Journal:  Science       Date:  2009-06-05       Impact factor: 47.728

7.  Structural specializations of A2, a force-sensing domain in the ultralarge vascular protein von Willebrand factor.

Authors:  Qing Zhang; Yan-Feng Zhou; Cheng-Zhong Zhang; Xiaohui Zhang; Chafen Lu; Timothy A Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-21       Impact factor: 11.205

8.  Hydration and conformational mechanics of single, end-tethered elastin-like polypeptides.

Authors:  Alexei Valiaev; Dong Woo Lim; Scott Schmidler; Robert L Clark; Ashutosh Chilkoti; Stefan Zauscher
Journal:  J Am Chem Soc       Date:  2008-07-23       Impact factor: 15.419

9.  Force-dependent isomerization kinetics of a highly conserved proline switch modulates the mechanosensing region of filamin.

Authors:  Lorenz Rognoni; Tobias Möst; Gabriel Žoldák; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-02       Impact factor: 11.205

10.  Molecular dynamics of the proline switch and its role in Crk signaling.

Authors:  Junchao Xia; Ronald M Levy
Journal:  J Phys Chem B       Date:  2014-04-16       Impact factor: 2.991

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