Literature DB >> 17456564

A case for "StopGo": reprogramming translation to augment codon meaning of GGN by promoting unconventional termination (Stop) after addition of glycine and then allowing continued translation (Go).

John F Atkins, Norma M Wills, Gary Loughran, Chih-Yu Wu, Krishna Parsawar, Martin D Ryan, Chung-Hsiung Wang, Chad C Nelson.   

Abstract

When a eukaryotic mRNA sequence specifying an amino acid motif known as 2A is directly followed by a proline codon, two nonoverlapping proteins are synthesized. From earlier work, the second protein is known to start with this proline codon and is not created by proteolysis. Here we identify the C-terminal amino acid of an upstream 2A-encoded product from Perina nuda picorna-like virus that is glycine specified by the last codon of the 2A-encoding sequence. This is an example of recoding where 2A promotes unconventional termination after decoding of the glycine codon and continued translation beginning with the 3' adjacent proline codon.

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Year:  2007        PMID: 17456564      PMCID: PMC1869043          DOI: 10.1261/rna.487907

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  49 in total

1.  The ribosomal exit tunnel functions as a discriminating gate.

Authors:  Hitoshi Nakatogawa; Koreaki Ito
Journal:  Cell       Date:  2002-03-08       Impact factor: 41.582

Review 2.  Recoding: translational bifurcations in gene expression.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  Gene       Date:  2002-03-20       Impact factor: 3.688

3.  Specificity of enzyme-substrate interactions in foot-and-mouth disease virus polyprotein processing.

Authors:  M D Ryan; G J Belsham; A M King
Journal:  Virology       Date:  1989-11       Impact factor: 3.616

4.  Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites.

Authors:  Richard P Fahlman; Olke C Uhlenbeck
Journal:  Biochemistry       Date:  2004-06-15       Impact factor: 3.162

5.  Crystal structure of a protein phosphatase 2A heterotrimeric holoenzyme.

Authors:  Uhn Soo Cho; Wenqing Xu
Journal:  Nature       Date:  2006-11-01       Impact factor: 49.962

Review 6.  The path to perdition is paved with protons.

Authors:  Rachel Green; Jon R Lorsch
Journal:  Cell       Date:  2002-09-20       Impact factor: 41.582

7.  A detailed kinetic analysis of the in vitro synthesis and processing of encephalomyocarditis virus products.

Authors:  R J Jackson
Journal:  Virology       Date:  1986-02       Impact factor: 3.616

8.  The complete genome sequence of Perina nuda picorna-like virus, an insect-infecting RNA virus with a genome organization similar to that of the mammalian picornaviruses.

Authors:  Chih-Yu Wu; Chu-Fang Lo; Chang-Jen Huang; Hon-Tsen Yu; Chung-Hsiung Wang
Journal:  Virology       Date:  2002-03-15       Impact factor: 3.616

9.  Relation between aminoacyl-tRNA stability and the fixed amino acid.

Authors:  D Hentzen; P Mandel; J P Garel
Journal:  Biochim Biophys Acta       Date:  1972-10-11

10.  Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination.

Authors:  Christopher S Hayes; Baundauna Bose; Robert T Sauer
Journal:  J Biol Chem       Date:  2002-07-08       Impact factor: 5.157

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  53 in total

1.  Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3'UTRs In Vivo.

Authors:  David J Young; Nicholas R Guydosh; Fan Zhang; Alan G Hinnebusch; Rachel Green
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

2.  Translational bypassing without peptidyl-tRNA anticodon scanning of coding gap mRNA.

Authors:  Norma M Wills; Michelle O'Connor; Chad C Nelson; Charles C Rettberg; Wai Mun Huang; Raymond F Gesteland; John F Atkins
Journal:  EMBO J       Date:  2008-09-04       Impact factor: 11.598

3.  Site-specific release of nascent chains from ribosomes at a sense codon.

Authors:  Victoria A Doronina; Cheng Wu; Pablo de Felipe; Matthew S Sachs; Martin D Ryan; Jeremy D Brown
Journal:  Mol Cell Biol       Date:  2008-05-05       Impact factor: 4.272

4.  Reverse pharmacogenomics: carbamazepine normalizes activation and attenuates thermal hyperexcitability of sensory neurons due to Nav 1.7 mutation I234T.

Authors:  Yang Yang; Talia Adi; Philip R Effraim; Lubin Chen; Sulayman D Dib-Hajj; Stephen G Waxman
Journal:  Br J Pharmacol       Date:  2017-07-30       Impact factor: 8.739

5.  Theiler's murine encephalomyelitis virus contrasts with encephalomyocarditis and foot-and-mouth disease viruses in its functional utilization of the StopGo non-standard translation mechanism.

Authors:  G Loughran; J E Libbey; S Uddowla; M F Scallan; M D Ryan; R S Fujinami; E Rieder; J F Atkins
Journal:  J Gen Virol       Date:  2012-10-24       Impact factor: 3.891

Review 6.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

7.  Expression of Multiple Taenia Solium Immunogens in Plant Cells Through a Ribosomal Skip Mechanism.

Authors:  Elizabeth Monreal-Escalante; Bernardo Bañuelos-Hernández; Marisela Hernández; Gladis Fragoso; Teresa Garate; Edda Sciutto; Sergio Rosales-Mendoza
Journal:  Mol Biotechnol       Date:  2015-07       Impact factor: 2.695

8.  Simultaneous expression of multiple proteins under a single promoter in Caenorhabditis elegans via a versatile 2A-based toolkit.

Authors:  Arnaud Ahier; Sophie Jarriault
Journal:  Genetics       Date:  2013-12-20       Impact factor: 4.562

9.  Extension of flavivirus protein C differentially affects early RNA synthesis and growth in mammalian and arthropod host cells.

Authors:  Sabrina Schrauf; Christian W Mandl; Lesley Bell-Sakyi; Tim Skern
Journal:  J Virol       Date:  2009-08-19       Impact factor: 5.103

10.  Recode-2: new design, new search tools, and many more genes.

Authors:  Michaël Bekaert; Andrew E Firth; Yan Zhang; Vadim N Gladyshev; John F Atkins; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2009-09-25       Impact factor: 16.971

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