Literature DB >> 17449675

Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography.

Hitoshi Nakamichi1, Volker Buss, Tetsuji Okada.   

Abstract

The primary photochemical process of the visual function has been investigated using the three crystallographic models, 11-cis-rhodopsin, all-trans-bathorhodopsin, and the artificial isomeric 9-cis-rhodopsin. Detailed examination of the atomic displacements and dihedral angle changes of the retinal chromophore involved in the interconversion among these isomers suggests the mechanism of isomerization efficiency.

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Year:  2007        PMID： 17449675      PMCID： PMC1877761          DOI： 10.1529/biophysj.107.108225

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


  10 in total

1.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

2.  Crystallographic analysis of primary visual photochemistry.

Authors:  Hitoshi Nakamichi; Tetsuji Okada
Journal:  Angew Chem Int Ed Engl       Date:  2006-06-26       Impact factor: 15.336

3.  Protein assistance in the photoisomerization of rhodopsin and 9-cis-rhodopsin--insights from experiment and theory.

Authors:  Sivakumar Sekharan; Minoru Sugihara; Oliver Weingart; Tetsuji Okada; Volker Buss
Journal:  J Am Chem Soc       Date:  2007-02-07       Impact factor: 15.419

4.  X-ray crystallographic analysis of 9-cis-rhodopsin, a model analogue visual pigment.

Authors:  Hitoshi Nakamichi; Tetsuji Okada
Journal:  Photochem Photobiol       Date:  2007 Mar-Apr       Impact factor: 3.421

5.  Origin and consequences of steric strain in the rhodopsin binding pocket.

Authors:  Minoru Sugihara; Julia Hufen; Volker Buss
Journal:  Biochemistry       Date:  2006-01-24       Impact factor: 3.162

Review 6.  Nature of the primary photochemical events in rhodopsin and bacteriorhodopsin.

Authors:  R R Birge
Journal:  Biochim Biophys Acta       Date:  1990-04-26

7.  The nature of the primary photochemical events in rhodopsin and isorhodopsin.

Authors:  R R Birge; C M Einterz; H M Knapp; L P Murray
Journal:  Biophys J       Date:  1988-03       Impact factor: 4.033

8.  Temperature and wavelength effects on the photochemistry of rhodopsin, isorhodopsin, bacteriorhodopsin and their photoproducts.

Authors:  J B Hurley; T G Ebrey; B Honig; M Ottolenghi
Journal:  Nature       Date:  1977-12-08       Impact factor: 49.962

9.  Structure of bovine rhodopsin in a trigonal crystal form.

Authors:  Jade Li; Patricia C Edwards; Manfred Burghammer; Claudio Villa; Gebhard F X Schertler
Journal:  J Mol Biol       Date:  2004-11-05       Impact factor: 5.469

10.  Effect of protonation on the isomerization properties of n-butylamine Schiff base of isomeric retinal as revealed by direct HPLC analyses: selection of isomerization pathways by retinal proteins.

Authors:  Y Koyama; K Kubo; M Komori; H Yasuda; Y Mukai
Journal:  Photochem Photobiol       Date:  1991-09       Impact factor: 3.421
  10 in total
  25 in total

Review 1.  New insights for drug design from the X-ray crystallographic structures of G-protein-coupled receptors.

Authors:  Kenneth A Jacobson; Stefano Costanzi
Journal:  Mol Pharmacol       Date:  2012-06-13       Impact factor: 4.436

2.  Molecular dynamics simulations reveal specific interactions of post-translational palmitoyl modifications with rhodopsin in membranes.

Authors:  Bjoern E S Olausson; Alan Grossfield; Michael C Pitman; Michael F Brown; Scott E Feller; Alexander Vogel
Journal:  J Am Chem Soc       Date:  2012-02-22       Impact factor: 15.419

3.  Conservation of molecular interactions stabilizing bovine and mouse rhodopsin.

Authors:  Shiho Kawamura; Alejandro T Colozo; Daniel J Müller; Paul S-H Park
Journal:  Biochemistry       Date:  2010-11-11       Impact factor: 3.162

Review 4.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

5.  G protein-coupled receptors: the evolution of structural insight.

Authors:  Samantha B Gacasan; Daniel L Baker; Abby L Parrill
Journal:  AIMS Biophys       Date:  2017-08-21

Review 6.  Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.

Authors:  Ivet Bahar; Timothy R Lezon; Ahmet Bakan; Indira H Shrivastava
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

Review 7.  Progress in elucidating the structural and dynamic character of G Protein-Coupled Receptor oligomers for use in drug discovery.

Authors:  A Bortolato; J C Mobarec; D Provasi; M Filizola
Journal:  Curr Pharm Des       Date:  2009       Impact factor: 3.116

8.  Molecular basis for dramatic changes in cannabinoid CB1 G protein-coupled receptor activation upon single and double point mutations.

Authors:  Caitlin E Scott; Ravinder Abrol; Kwang H Ahn; Debra A Kendall; William A Goddard
Journal:  Protein Sci       Date:  2013-01       Impact factor: 6.725

9.  The role of the non-covalent β-ionone-ring binding site in rhodopsin: historical and physiological perspective.

Authors:  Hiroyuki Matsumoto; Tatsuo Iwasa; Tôru Yoshizawa
Journal:  Photochem Photobiol Sci       Date:  2015-11       Impact factor: 3.982

10.  Modern homology modeling of G-protein coupled receptors: which structural template to use?

Authors:  Juan Carlos Mobarec; Roberto Sanchez; Marta Filizola
Journal:  J Med Chem       Date:  2009-08-27       Impact factor: 7.446
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