Literature DB >> 17449669

Mechanics of force propagation in TonB-dependent outer membrane transport.

James Gumbart1, Michael C Wiener, Emad Tajkhorshid.   

Abstract

For the uptake of scarce yet essential organometallic compounds, outer membrane transporters of Gram-negative bacteria work in concert with an energy-generating inner membrane complex, thus spanning the periplasmic space to drive active transport. Here, we examine the interaction of TonB, an inner membrane protein, with an outer membrane transporter based upon a recent crystal structure of a TonB-transporter complex to characterize two largely unknown steps of the transport cycle: how energy is transmitted from TonB to the transporter and how energy transduction initiates transport. Simulations of TonB in complex with BtuB reveal that force applied to TonB is transmitted to BtuB without disruption of the very small connection between the two, supporting a mechanical mode of coupling. Based on the results of different pulling simulations, we propose that the force transduction instigates a partial unfolding of the pore-occluding luminal domain of the transporter, a potential step in the transport cycle. Furthermore, analysis of the electrostatic potentials and salt bridge interactions between the two proteins during the simulations hints at involvement of electrostatic forces in long-range interaction and binding of TonB and BtuB.

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Year:  2007        PMID: 17449669      PMCID: PMC1896255          DOI: 10.1529/biophysj.107.104158

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  54 in total

Review 1.  Three paradoxes of ferric enterobactin uptake.

Authors:  Phillip E Klebba
Journal:  Front Biosci       Date:  2003-09-01

2.  The mechanical stability of ubiquitin is linkage dependent.

Authors:  Mariano Carrion-Vazquez; Hongbin Li; Hui Lu; Piotr E Marszalek; Andres F Oberhauser; Julio M Fernandez
Journal:  Nat Struct Biol       Date:  2003-08-17

3.  Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Authors:  David J Brockwell; Emanuele Paci; Rebecca C Zinober; Godfrey S Beddard; Peter D Olmsted; D Alastair Smith; Richard N Perham; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2003-08-17

4.  Mutant analysis of the Escherichia coli FhuA protein reveals sites of FhuA activity.

Authors:  Franziska Endriss; Michael Braun; Helmut Killmann; Volkmar Braun
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

Review 5.  Touch and go: tying TonB to transport.

Authors:  Kathleen Postle; Robert J Kadner
Journal:  Mol Microbiol       Date:  2003-08       Impact factor: 3.501

6.  The Escherichia coli outer membrane cobalamin transporter BtuB: structural analysis of calcium and substrate binding, and identification of orthologous transporters by sequence/structure conservation.

Authors:  David P Chimento; Robert J Kadner; Michael C Wiener
Journal:  J Mol Biol       Date:  2003-10-03       Impact factor: 5.469

7.  Structural evidence for iron-free citrate and ferric citrate binding to the TonB-dependent outer membrane transporter FecA.

Authors:  Wyatt W Yue; Sylvestre Grizot; Susan K Buchanan
Journal:  J Mol Biol       Date:  2003-09-12       Impact factor: 5.469

8.  In vivo evidence of TonB shuttling between the cytoplasmic and outer membrane in Escherichia coli.

Authors:  Ray A Larsen; Tracy E Letain; Kathleen Postle
Journal:  Mol Microbiol       Date:  2003-07       Impact factor: 3.501

9.  Substrate-induced transmembrane signaling in the cobalamin transporter BtuB.

Authors:  David P Chimento; Arun K Mohanty; Robert J Kadner; Michael C Wiener
Journal:  Nat Struct Biol       Date:  2003-05

10.  Molecular dynamics simulations of the bacterial outer membrane protein FhuA: a comparative study of the ferrichrome-free and bound states.

Authors:  José D Faraldo-Gómez; Graham R Smith; Mark S P Sansom
Journal:  Biophys J       Date:  2003-09       Impact factor: 4.033

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  48 in total

1.  The N-terminal domain of a TonB-dependent transporter undergoes a reversible stepwise denaturation.

Authors:  Ricardo H Flores Jiménez; David S Cafiso
Journal:  Biochemistry       Date:  2012-04-22       Impact factor: 3.162

2.  Mobility of BtuB and OmpF in the Escherichia coli outer membrane: implications for dynamic formation of a translocon complex.

Authors:  Jeff Spector; Stanislav Zakharov; Yoriko Lill; Onkar Sharma; William A Cramer; Ken Ritchie
Journal:  Biophys J       Date:  2010-12-15       Impact factor: 4.033

Review 3.  Signaling mechanisms for activation of extracytoplasmic function (ECF) sigma factors.

Authors:  Benjamin E Brooks; Susan K Buchanan
Journal:  Biochim Biophys Acta       Date:  2007-06-15

4.  The proline-rich domain of TonB possesses an extended polyproline II-like conformation of sufficient length to span the periplasm of Gram-negative bacteria.

Authors:  Silvia Domingo Köhler; Annemarie Weber; S Peter Howard; Wolfram Welte; Malte Drescher
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

5.  Fiber formation across the bacterial outer membrane by the chaperone/usher pathway.

Authors:  Han Remaut; Chunyan Tang; Nadine S Henderson; Jerome S Pinkner; Tao Wang; Scott J Hultgren; David G Thanassi; Gabriel Waksman; Huilin Li
Journal:  Cell       Date:  2008-05-16       Impact factor: 41.582

6.  The effect of different force applications on the protein-protein complex Barnase-Barstar.

Authors:  Jan Neumann; Kay-Eberhard Gottschalk
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

7.  Going Outside the TonB Box: Identification of Novel FepA-TonB Interactions In Vivo.

Authors:  Michael G Gresock; Kathleen Postle
Journal:  J Bacteriol       Date:  2017-04-25       Impact factor: 3.490

8.  TonB-dependent transporter FhuA in planar lipid bilayers: partial exit of its plug from the barrel.

Authors:  Eshwar Udho; Karen S Jakes; Alan Finkelstein
Journal:  Biochemistry       Date:  2012-08-15       Impact factor: 3.162

9.  TonB-dependent transporters and their occurrence in cyanobacteria.

Authors:  Oliver Mirus; Sascha Strauss; Kerstin Nicolaisen; Arndt von Haeseler; Enrico Schleiff
Journal:  BMC Biol       Date:  2009-10-12       Impact factor: 7.431

10.  Comprehensive in silico prediction and analysis of chlamydial outer membrane proteins reflects evolution and life style of the Chlamydiae.

Authors:  Eva Heinz; Patrick Tischler; Thomas Rattei; Garry Myers; Michael Wagner; Matthias Horn
Journal:  BMC Genomics       Date:  2009-12-29       Impact factor: 3.969

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