Literature DB >> 17449029

Structure-based identification of small molecule compounds targeting cell cyclophilin A with anti-HIV-1 activity.

Shuai Chen1, Xuemei Zhao, Jinzhi Tan, Hong Lu, Zhi Qi, Qiang Huang, Xianzhuo Zeng, Mingjun Zhang, Shibo Jiang, Hualiang Jiang, Long Yu.   

Abstract

Cyclophilin A acts as protein folding chaperones and intracellular transports in many cellular processes. Previous studies have shown that cyclophilin A can interact with HIV-1 (human immunodeficiency virus type 1) gag protein and enhance viral infectivity. Many cyclophilin A inhibitors such as cyclosporin A can inhibit HIV-1 replication in vitro. Here, we report a structure-based identification of novel non-peptidic cyclophilin A inhibitors as anti-HIV lead compounds. Following a computer-aided virtual screening and subsequent surface plasmon resonance (SPR) analysis, 12 low molecular weight cyclophilin A ligands were selected for further evaluation of their in vitro inhibition of peptidyl-prolyl cis-trans isomerase (PPIase) activity of cyclophilin A and HIV-1 replication. Five of these compounds (FD5, FD8, FD9, FD10 and FD12) exhibited inhibition against both PPIase activity and HIV-1 infection. These active compounds will be used as leads for structure and activity relationship (SAR) and optimization studies in order to design more effective anti-HIV-1 therapeutics, and as probes for investigating the effect of cyclophilins on HIV-1 replication.

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Year:  2007        PMID: 17449029      PMCID: PMC3033441          DOI: 10.1016/j.ejphar.2007.03.023

Source DB:  PubMed          Journal:  Eur J Pharmacol        ISSN: 0014-2999            Impact factor:   4.432


  28 in total

1.  Synthesis and biological evaluation of non-peptidic cyclophilin ligands.

Authors:  Yong-Qian Wu; Sergei Belyakov; Chi Choi; David Limburg; Bert E Thomas IV; Mark Vaal; Ling Wei; Douglas E Wilkinson; Agnes Holmes; Mike Fuller; Jocelyn McCormick; Maureen Connolly; Tim Moeller; Joseph Steiner; Gregory S Hamilton
Journal:  J Med Chem       Date:  2003-03-27       Impact factor: 7.446

Review 2.  Cyclophilins: unexpected messengers in intercellular communications.

Authors:  Michael I Bukrinsky
Journal:  Trends Immunol       Date:  2002-07       Impact factor: 16.687

3.  Determination of kinetic constants for peptidyl prolyl cis-trans isomerases by an improved spectrophotometric assay.

Authors:  J L Kofron; P Kuzmic; V Kishore; E Colón-Bonilla; D H Rich
Journal:  Biochemistry       Date:  1991-06-25       Impact factor: 3.162

4.  Using shape complementarity as an initial screen in designing ligands for a receptor binding site of known three-dimensional structure.

Authors:  R L DesJarlais; R P Sheridan; G L Seibel; J S Dixon; I D Kuntz; R Venkataraghavan
Journal:  J Med Chem       Date:  1988-04       Impact factor: 7.446

5.  Cyclophilin A regulates HIV-1 infectivity, as demonstrated by gene targeting in human T cells.

Authors:  D Braaten; J Luban
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

6.  Cloning, expression, and purification of human cyclophilin in Escherichia coli and assessment of the catalytic role of cysteines by site-directed mutagenesis.

Authors:  J Liu; M W Albers; C M Chen; S L Schreiber; C T Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  1990-03       Impact factor: 11.205

7.  Calcineurin is a common target of cyclophilin-cyclosporin A and FKBP-FK506 complexes.

Authors:  J Liu; J D Farmer; W S Lane; J Friedman; I Weissman; S L Schreiber
Journal:  Cell       Date:  1991-08-23       Impact factor: 41.582

8.  Cyclophilin: a specific cytosolic binding protein for cyclosporin A.

Authors:  R E Handschumacher; M W Harding; J Rice; R J Drugge; D W Speicher
Journal:  Science       Date:  1984-11-02       Impact factor: 47.728

9.  Peptidyl-prolyl cis-trans isomerase is the cyclosporin A-binding protein cyclophilin.

Authors:  N Takahashi; T Hayano; M Suzuki
Journal:  Nature       Date:  1989-02-02       Impact factor: 49.962

10.  One novel quinoxaline derivative as a potent human cyclophilin A inhibitor shows highly inhibitory activity against mouse spleen cell proliferation.

Authors:  Jian Li; Jing Chen; Li Zhang; Feng Wang; Chunshan Gui; Li Zhang; Yu Qin; Qiang Xu; Hong Liu; Fajun Nan; Jingkang Shen; Donglu Bai; Kaixian Chen; Xu Shen; Hualiang Jiang
Journal:  Bioorg Med Chem       Date:  2006-05-06       Impact factor: 3.641

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  9 in total

Review 1.  Repurposing of cyclophilin A inhibitors as broad-spectrum antiviral agents.

Authors:  Jinhe Han; Myoung Kyu Lee; Yejin Jang; Won-Jea Cho; Meeheyin Kim
Journal:  Drug Discov Today       Date:  2022-05-21       Impact factor: 8.369

2.  Characterizing and controlling the inherent dynamics of cyclophilin-A.

Authors:  Jennifer Schlegel; Geoffrey S Armstrong; Jasmina S Redzic; Fengli Zhang; Elan Zohar Eisenmesser
Journal:  Protein Sci       Date:  2009-04       Impact factor: 6.725

Review 3.  Rheumatoid arthritis in patients with HIV: management challenges.

Authors:  Matthew B Carroll; Joshua H Fields; Philip G Clerc
Journal:  Open Access Rheumatol       Date:  2016-04-29

4.  Synthetic lethal short hairpin RNA screening reveals that ring finger protein 183 confers resistance to trametinib in colorectal cancer cells.

Authors:  Rong Geng; Xin Tan; Zhixiang Zuo; Jiangxue Wu; Zhizhong Pan; Wei Shi; Ranyi Liu; Chen Yao; Gaoyuan Wang; Jiaxin Lin; Lin Qiu; Wenlin Huang; Shuai Chen
Journal:  Chin J Cancer       Date:  2017-07-31

5.  RNF183 promotes proliferation and metastasis of colorectal cancer cells via activation of NF-κB-IL-8 axis.

Authors:  Rong Geng; Xin Tan; Jiangxue Wu; Zhizhong Pan; Min Yi; Wei Shi; Ranyi Liu; Chen Yao; Gaoyuan Wang; Jiaxin Lin; Lin Qiu; Wenlin Huang; Shuai Chen
Journal:  Cell Death Dis       Date:  2017-08-10       Impact factor: 8.469

6.  Cyclophilin J PPIase Inhibitors Derived from 2,3-Quinoxaline-6 Amine Exhibit Antitumor Activity.

Authors:  Xuemei Zhao; Chengcai Xia; Xiaodan Wang; Hao Wang; Ming Xin; Long Yu; Yulong Liang
Journal:  Front Pharmacol       Date:  2018-02-21       Impact factor: 5.810

7.  Thermo-kinetic analysis space expansion for cyclophilin-ligand interactions - identification of a new nonpeptide inhibitor using Biacore™ T200.

Authors:  Martin A Wear; Matthew W Nowicki; Elizabeth A Blackburn; Iain W McNae; Malcolm D Walkinshaw
Journal:  FEBS Open Bio       Date:  2017-02-23       Impact factor: 2.693

8.  Cyclophilin J limits inflammation through the blockage of ubiquitin chain sensing.

Authors:  Chunjie Sheng; Chen Yao; Ziyang Wang; Hongyuan Chen; Yu Zhao; Dazhi Xu; Haojie Huang; Wenlin Huang; Shuai Chen
Journal:  Nat Commun       Date:  2018-10-22       Impact factor: 14.919

9.  Discovery of novel low-molecular-weight HIV-1 inhibitors interacting with cyclophilin A using in silico screening and biological evaluations.

Authors:  Yu-Shi Tian; Chris Verathamjamras; Norihito Kawashita; Kousuke Okamoto; Teruo Yasunaga; Kazuyoshi Ikuta; Masanori Kameoka; Tatsuya Takagi
Journal:  J Mol Model       Date:  2012-09-05       Impact factor: 1.810

  9 in total

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