Literature DB >> 17442775

Inference, validation, and dynamic modeling of transcription networks in multipotent hematopoietic cells.

Shamit Soneji1, Sui Huang, Matthew Loose, Ian John Donaldson, Roger Patient, Berthold Göttgens, Tariq Enver, Gillian May.   

Abstract

Identifying the transcription factor interactions that are responsible for cell-specific gene expression programs is key to understanding the regulation of cell behaviors, such as self-renewal, proliferation, differentiation, and death. The rapidly increasing availability of microarray-derived global gene expression data sets, coupled with genome sequence information from multiple species, has driven the development of computational methods to reverse engineer and dynamically model genetic regulatory networks. An understanding of the architecture and behavior of transcriptional networks should lend insight into how the huge number of potential gene expression programs is constrained and facilitates efforts to direct or redirect cell fate.

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Year:  2007        PMID: 17442775     DOI: 10.1196/annals.1392.018

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  7 in total

1.  A novel view on stem cell development: analysing the shape of cellular genealogies.

Authors:  I Glauche; R Lorenz; D Hasenclever; I Roeder
Journal:  Cell Prolif       Date:  2009-02-27       Impact factor: 6.831

2.  Model discrimination in dynamic molecular systems: application to parotid de-differentiation network.

Authors:  Jaejik Kim; Jiaxu Li; Srirangapatnam G Venkatesh; Douglas S Darling; Grzegorz A Rempala
Journal:  J Comput Biol       Date:  2013-07       Impact factor: 1.479

Review 3.  Form and function: how estrogen and progesterone regulate the mammary epithelial hierarchy.

Authors:  Lisa M Arendt; Charlotte Kuperwasser
Journal:  J Mammary Gland Biol Neoplasia       Date:  2015-07-19       Impact factor: 2.673

4.  A single cis element maintains repression of the key developmental regulator Gata2.

Authors:  Jonathan W Snow; Jennifer J Trowbridge; Tohru Fujiwara; Nikla E Emambokus; Jeffrey A Grass; Stuart H Orkin; Emery H Bresnick
Journal:  PLoS Genet       Date:  2010-09-09       Impact factor: 5.917

5.  Characterizing heterogeneity in leukemic cells using single-cell gene expression analysis.

Authors:  Assieh Saadatpour; Guoji Guo; Stuart H Orkin; Guo-Cheng Yuan
Journal:  Genome Biol       Date:  2014-12-03       Impact factor: 13.583

6.  Transcriptome analysis of mammary epithelial subpopulations identifies novel determinants of lineage commitment and cell fate.

Authors:  Howard Kendrick; Joseph L Regan; Fiona-Ann Magnay; Anita Grigoriadis; Costas Mitsopoulos; Marketa Zvelebil; Matthew J Smalley
Journal:  BMC Genomics       Date:  2008-12-08       Impact factor: 3.969

7.  Runx1-mediated hematopoietic stem-cell emergence is controlled by a Gata/Ets/SCL-regulated enhancer.

Authors:  Wade T Nottingham; Andrew Jarratt; Matthew Burgess; Caroline L Speck; Jan-Fang Cheng; Shyam Prabhakar; Eddy M Rubin; Pik-Shan Li; Jackie Sloane-Stanley; John Kong-A-San; Marella F T R de Bruijn
Journal:  Blood       Date:  2007-09-06       Impact factor: 22.113

  7 in total

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