Literature DB >> 17439861

A system's view of the evolution of life.

Robert J P Williams1.   

Abstract

Previous treatments of biological evolution have concentrated upon either the general appearance or habits of organisms or the sequences of molecules, such as their proteins and DNA (RNA), within species. There is no consideration of the changing relationship of the chemistry of organisms to the elements and energy available from the environment. In essence, organisms at all times had to accumulate certain elements while rejecting others. Central to accumulation were C, N, H, P, S, K, Mg and Fe while, as ions, Na, Cl, Ca and other heavy metals were largely rejected. In order to form the vital biopolymers, C and H, from CO2 and H2O, had to be combined generating oxygen. The oxygen then slowly oxidized the environment over long periods of time. These environmental changes were relatively rapid, unconstrained and continuous, and they imposed a necessary sequential adaptation by organisms while increasing the use of energy. Then, evolution has a chemical direction in a combined organism/environment ecosystem. Joint organization of the initial reductive chemistry of cells and the later need to handle oxidative chemistry has also forced the complexity of chemistry of organism in compartments. The complexity increased to take full advantage of the environment from bacteria to humans in a logical, physical, compartmental and chemical sequence of the whole system. In one sense, rejected material can be looked upon as waste and, in the context of this article, leads to the consideration of the importance of waste from the activities of humankind.

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Year:  2007        PMID: 17439861      PMCID: PMC2396344          DOI: 10.1098/rsif.2007.0225

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  15 in total

Review 1.  The involvement of molybdenum in life.

Authors:  R J P Williams; J J R Fraústo da Silva
Journal:  Biochem Biophys Res Commun       Date:  2002-03-29       Impact factor: 3.575

2.  Femtomolar sensitivity of metalloregulatory proteins controlling zinc homeostasis.

Authors:  C E Outten; T V O'Halloran
Journal:  Science       Date:  2001-06-07       Impact factor: 47.728

3.  Life and the evolution of Earth's atmosphere.

Authors:  James F Kasting; Janet L Siefert
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

Review 4.  On the origin of mitochondria: a genomics perspective.

Authors:  Siv G E Andersson; Olof Karlberg; Björn Canbäck; Charles G Kurland
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-01-29       Impact factor: 6.237

5.  On the evolution of cells.

Authors:  Carl R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-19       Impact factor: 11.205

Review 6.  Immunity through DNA deamination.

Authors:  Michael S Neuberger; Reuben S Harris; Javier Di Noia; Svend K Petersen-Mahrt
Journal:  Trends Biochem Sci       Date:  2003-06       Impact factor: 13.807

7.  Steroids, triterpenoids and molecular oxygen.

Authors:  Roger E Summons; Alexander S Bradley; Linda L Jahnke; Jacob R Waldbauer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-06-29       Impact factor: 6.237

Review 8.  Palaeoclimates: the first two billion years.

Authors:  James F Kasting; Shuhei Ono
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-06-29       Impact factor: 6.237

9.  Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry.

Authors:  Christopher L Dupont; Song Yang; Brian Palenik; Philip E Bourne
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-10       Impact factor: 11.205

10.  Prebiotic synthesis from CO atmospheres: implications for the origins of life.

Authors:  Shin Miyakawa; Hiroto Yamanashi; Kensei Kobayashi; H James Cleaves; Stanley L Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-30       Impact factor: 11.205

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  8 in total

Review 1.  Bio-metals imaging and speciation in cells using proton and synchrotron radiation X-ray microspectroscopy.

Authors:  Richard Ortega; Guillaume Devès; Asunción Carmona
Journal:  J R Soc Interface       Date:  2009-07-15       Impact factor: 4.118

Review 2.  Redox cycling in iron uptake, efflux, and trafficking.

Authors:  Daniel J Kosman
Journal:  J Biol Chem       Date:  2010-06-03       Impact factor: 5.157

3.  Stem cells from human dental pulp and apical papilla: Morphological and synchrotron radiation analysis.

Authors:  Karla-Mayra Rezende; Marcelo Bönecker; Luciana Côrrea; Carlos-Alberto Perez; Giancarlo-Espósito-de Souza Brito; Gabriela-Oliveira Berti; Andrea-Mantesso Pobocik
Journal:  J Clin Exp Dent       Date:  2021-12-01

4.  Iron metabolism in aerobes: managing ferric iron hydrolysis and ferrous iron autoxidation.

Authors:  Daniel J Kosman
Journal:  Coord Chem Rev       Date:  2013-01-01       Impact factor: 22.315

Review 5.  The composition and organization of cytoplasm in prebiotic cells.

Authors:  Jack T Trevors
Journal:  Int J Mol Sci       Date:  2011-03-03       Impact factor: 5.923

Review 6.  On the Capability of Oxidovanadium(IV) Derivatives to Act as All-Around Catalytic Promoters Since the Prebiotic World.

Authors:  Patrizio Campitelli; Marcello Crucianelli
Journal:  Molecules       Date:  2020-07-06       Impact factor: 4.411

7.  Transmembrane protein oxygen content and compartmentalization of cells.

Authors:  Rajkumar Sasidharan; Andrew Smith; Mark Gerstein
Journal:  PLoS One       Date:  2008-07-16       Impact factor: 3.240

Review 8.  Experimental evolution of protein-protein interaction networks.

Authors:  Betül Kaçar; Eric A Gaucher
Journal:  Biochem J       Date:  2013-08-01       Impact factor: 3.857

  8 in total

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