Literature DB >> 17439260

Rupture force analysis and the associated systematic errors in force spectroscopy by AFM.

Chad Ray1, Jason R Brown, Boris B Akhremitchev.   

Abstract

Force spectroscopy is a new and valuable tool in physical chemistry and biophysics. However, data analysis has yet to be standardized, hindering the advancement of the technique. In this article, treatment of the rupture forces is described in the framework of the Bell-Evans model, and the systematic errors associated with the tether effect for approaches that utilize the most probable, the median, and the mean rupture forces are compared. It is shown that significant systematic errors in the dissociation rate can result from nonlinear loading with polymeric tethers even if the apparent loading rate is used in the analysis. Analytical expressions for the systematic errors are provided for the most probable and median forces. The use of these expressions to correct the associated systematic errors is illustrated by the analysis of the measured rupture forces between single hexadecane molecules in water. It is noted that the measured distributions of rupture forces often contain high forces that are unaccounted for by theoretical models. Experimental data indicate that the most significant effect of the high forces "tail" is on the dissociation rate obtained from the median force analysis whereas the barrier width appears to be unaffected.

Entities:  

Year:  2007        PMID: 17439260     DOI: 10.1021/la070131e

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  14 in total

1.  Long lifetime of hydrogen-bonded DNA basepairs by force spectroscopy.

Authors:  Alexander Fuhrmann; Sebastian Getfert; Qiang Fu; Peter Reimann; Stuart Lindsay; Robert Ros
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

2.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

3.  Association kinetics from single molecule force spectroscopy measurements.

Authors:  Senli Guo; Nimit Lad; Chad Ray; Boris B Akhremitchev
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

4.  Effects of multiple-bond ruptures on kinetic parameters extracted from force spectroscopy measurements: revisiting biotin-streptavidin interactions.

Authors:  Senli Guo; Chad Ray; Andrea Kirkpatrick; Nimit Lad; Boris B Akhremitchev
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

5.  Early stages for Parkinson's development: alpha-synuclein misfolding and aggregation.

Authors:  Junping Yu; Yuri L Lyubchenko
Journal:  J Neuroimmune Pharmacol       Date:  2008-07-17       Impact factor: 4.147

6.  Self-assembled enzymatic monolayer directly bound to a gold surface: activity and molecular recognition force spectroscopy studies.

Authors:  Lindsay R Ditzler; Arundhuti Sen; Michael J Gannon; Amnon Kohen; Alexei V Tivanski
Journal:  J Am Chem Soc       Date:  2011-08-04       Impact factor: 15.419

7.  A Simple and Practical Spreadsheet-Based Method to Extract Single-Molecule Dissociation Kinetics from Variable Loading-Rate Force Spectroscopy Data.

Authors:  Michael J Serpe; Farrell R Kersey; Jason R Whitehead; Scott M Wilson; Robert L Clark; Stephen L Craig
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2008-12-11       Impact factor: 4.126

8.  Loss of alpha-catenin decreases the strength of single E-cadherin bonds between human cancer cells.

Authors:  Saumendra Bajpai; Yunfeng Feng; Ranjini Krishnamurthy; Gregory D Longmore; Denis Wirtz
Journal:  J Biol Chem       Date:  2009-05-19       Impact factor: 5.157

9.  Improving estimation of kinetic parameters in dynamic force spectroscopy using cluster analysis.

Authors:  Chi-Fu Yen; Sanjeevi Sivasankar
Journal:  J Chem Phys       Date:  2018-03-28       Impact factor: 3.488

10.  Force measurement enabling precise analysis by dynamic force spectroscopy.

Authors:  Atsushi Taninaka; Yuuichi Hirano; Osamu Takeuchi; Hidemi Shigekawa
Journal:  Int J Mol Sci       Date:  2011-12-29       Impact factor: 5.923

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