Literature DB >> 17437184

Group I introns and GNRA tetraloops: remnants of 'The RNA world'?

J Prathiba1, R Malathi.   

Abstract

GNRA tetraloops, found in high frequency in natural RNAs, make loop-receptor interactions, stabilizing the tertiary structure of Group I introns, a class of small RNAs. Analyzing 230 Group I introns, to study the distribution and sequence pattern of the GNRA tetraloops, we suggest that these features reflect the ancestral nature of these catalytic molecules, in a prebiotic RNA world. The adenosine rich GNRA tetraloops would have interacted with each other through long range RNA-RNA interactions to form higher order structures forming potential sites that render the propensity for the short RNAs to bind to metal ions from the prebiotic pool, aiding them to act as metalloenzymes.

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Year:  2007        PMID: 17437184     DOI: 10.1007/s11033-007-9076-4

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  30 in total

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Journal:  J Mol Biol       Date:  1999-12-10       Impact factor: 5.469

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-02       Impact factor: 11.205

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Journal:  Curr Opin Struct Biol       Date:  2001-06       Impact factor: 6.809

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Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

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Journal:  Nature       Date:  1989-11-23       Impact factor: 49.962

6.  Involvement of a GNRA tetraloop in long-range RNA tertiary interactions.

Authors:  L Jaeger; F Michel; E Westhof
Journal:  J Mol Biol       Date:  1994-03-11       Impact factor: 5.469

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Authors:  C Guerrier-Takada; K Gardiner; T Marsh; N Pace; S Altman
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

8.  Making ends meet: a model for RNA splicing in fungal mitochondria.

Authors:  R W Davies; R B Waring; J A Ray; T A Brown; C Scazzocchio
Journal:  Nature       Date:  1982-12-23       Impact factor: 49.962

9.  Activity and thermostability of the small self-splicing group I intron in the pre-tRNA(lle) of the purple bacterium Azoarcus.

Authors:  M Tanner; T Cech
Journal:  RNA       Date:  1996-01       Impact factor: 4.942

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Authors:  F Michel; A Jacquier; B Dujon
Journal:  Biochimie       Date:  1982-10       Impact factor: 4.079

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  4 in total

1.  RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways.

Authors:  Somdeb Mitra; Alain Laederach; Barbara L Golden; Russ B Altman; Michael Brenowitz
Journal:  RNA       Date:  2011-06-28       Impact factor: 4.942

2.  Secondary structure encodes a cooperative tertiary folding funnel in the Azoarcus ribozyme.

Authors:  Anthony M Mustoe; Hashim M Al-Hashimi; Charles L Brooks
Journal:  Nucleic Acids Res       Date:  2015-10-19       Impact factor: 16.971

3.  5' cis elements direct nodavirus RNA1 recruitment to mitochondrial sites of replication complex formation.

Authors:  Priscilla M Van Wynsberghe; Paul Ahlquist
Journal:  J Virol       Date:  2009-01-14       Impact factor: 5.103

4.  Attenuation of loop-receptor interactions with pseudoknot formation.

Authors:  Kirill A Afonin; Yen-Ping Lin; Erin R Calkins; Luc Jaeger
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

  4 in total

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